Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001303-TA|BGIBMGA001303-PA|IPR006844|OST3/OST6,
IPR012336|Thioredoxin-like fold
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    80   7e-16
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   1.0  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   1.8  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   5.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   7.3  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   9.6  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 56/252 (22%), Positives = 114/252 (45%), Gaps = 8/252 (3%)

Query: 292 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 351
           L   T    VI +    F   V    +D++ V +F+A +    C +C+ +  E+  +ANS
Sbjct: 23  LNSKTDADGVIQITGRLFHRIVNGK-QDFTTVALFSADSSTMNCDVCRLIEPEFKALANS 81

Query: 352 FRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERA-GIH 410
           ++     ++ + F   DF +  ++FQ   + + P    F    KPK    +  + + G+ 
Sbjct: 82  YKLKYGLDSGIRFTYADFGKNKNLFQDFSIESVPNFWIF----KPKSIQAIHVDLSHGVT 137

Query: 411 AEAIAKWIQDRT-DVQIRVFRSPNYSAAVAFSTLFIILAGFLYIRRNNLEFLYNKQLWAV 469
           A  +A  ++  T  +   V++        AF +  I+ A   + R+  ++   ++++WA 
Sbjct: 138 ASHLAAIVEKHTGKIADIVYKQDQAKRVGAFLSYIIVGAALFFTRKIIVKIFTSRKVWAA 197

Query: 470 CAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP-VYINGGSHGQFVLESYIVAILNGAVVVG 528
             +     + SG M+ +IR  P+  R + G  +++ G    QF  E  +V++L  A+ + 
Sbjct: 198 LTIITVITLSSGYMFTRIRFSPYSQRGEHGENLWLAGSQQFQFGAEVQVVSLLYTALTMS 257

Query: 529 MILMIEAAGGVK 540
            I +   A  V+
Sbjct: 258 SIFLAIVAPKVE 269


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 323 VVMFTAMAPARRCAICQHVNDEYLLVANS-FRFSAAYNNKLFFGIVDFDE 371
           V+ + A A   RC++C  VND Y  ++ S  +  A+ +   F  +  F E
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFVE 138


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 233 YVKPKGAPA-PSNPVRPPNTSTFNSHDDEY 261
           ++K  GA A PSNP +PP TS F++    Y
Sbjct: 198 WLKTGGASAAPSNPRQPPPTSNFSNRKARY 227


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 116 CLGRIGGCLRGDAKTWLDEWVTGDRTW 142
           C  +   CL+ D + W++ W    RTW
Sbjct: 87  CQEKFEKCLKEDDEEWIELWDLESRTW 113


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 21  LLHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDASVGT 64
           ++ P+AG  T T  SG  E +   AE  GT   +  + + +VGT
Sbjct: 213 VIEPTAGTVTTTIYSGDQEYTTILAEASGTVPGTVEVIEPAVGT 256



 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 22  LHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDASVGT 64
           + P+AG  T T  SG++E +   AE  GT   +  + +   GT
Sbjct: 106 IEPTAGTVTTTITSGSHEFTTTLAEASGTVPGTVEVVEPLAGT 148


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 359 NNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERAGIHAEAIAKWI 418
           +N +  G +D D  SD+     +   P ++ FP    P  ++ + +  A    +++ +++
Sbjct: 71  HNDVLIGKIDADTHSDVADKYHITGFPTLIWFP----PDGSEPVQYSNAR-DVDSLTQFV 125

Query: 419 QDRTDVQIRVFRSPN 433
            ++T ++ R    P+
Sbjct: 126 SEKTGIKKRKIVLPS 140


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,121
Number of Sequences: 5004
Number of extensions: 109544
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 11
length of query: 590
length of database: 2,362,478
effective HSP length: 77
effective length of query: 513
effective length of database: 1,977,170
effective search space: 1014288210
effective search space used: 1014288210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)