Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001303-TA|BGIBMGA001303-PA|IPR006844|OST3/OST6,
IPR012336|Thioredoxin-like fold
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   1e-35
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.069
SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1)                      32   1.1  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.6  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   31   2.6  
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              30   4.5  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    30   6.0  
SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)                   29   7.9  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score =  148 bits (358), Expect = 1e-35
 Identities = 61/108 (56%), Positives = 86/108 (79%)

Query: 298 KKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAA 357
           +KS+I LN +K++ Y+++ PR+YS ++M TA+AP R+CAIC+  ++EYL++ANS+R+S  
Sbjct: 45  RKSIIRLNGDKYRTYLRASPRNYSVILMLTALAPHRQCAICREAHNEYLIIANSWRYSQQ 104

Query: 358 YNNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFE 405
           Y N+LFF +VDFDEG D+F  LRLN+APV MHFP KGKPK  DT D +
Sbjct: 105 YTNRLFFAMVDFDEGPDVFNALRLNSAPVFMHFPPKGKPKKGDTYDMQ 152



 Score = 66.1 bits (154), Expect = 7e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 425 QIRVFRSPNYSAAVAFSTLFIILAGFLYIRRNNLEFLYNKQLWAVCAV 472
           ++RVFR PNY  A+A   L +++ G LYIRR NLEFLYNK  WA+ A+
Sbjct: 248 EVRVFRPPNYMGAIALGLLVVLIGGLLYIRRKNLEFLYNKSYWAMGAL 295


>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 36.3 bits (80), Expect = 0.069
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 8   GRLPVT-----APLTSTPLLHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDASV 62
           G LPVT      P T+T    P +G  TP + +G+  V+++   T GT   S+++  +SV
Sbjct: 560 GTLPVTLSGTMTPGTTTNRTVPLSGSLTPGTPTGSRPVTLSGTVTAGTSSTSRSVTLSSV 619

Query: 63  GT 64
           GT
Sbjct: 620 GT 621


>SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1)
          Length = 500

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 132 LDEWVTGDRTWTNFKAEFRSLCPREVDMATVLYDIMSTNSNKFTTYAEYARKSLLRLNIV 191
           L+EW  G+  W  F++++R LC      ++ L+DI +T      + A   R+ L ++   
Sbjct: 338 LEEWAQGNIRW--FESDYRCLCEDCEKPSSRLHDIKTTGKRVAQSRALIVRQELCKVVAT 395

Query: 192 KGLSD 196
              SD
Sbjct: 396 NEFSD 400


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 235 KPKGAPAPSNPVRPPNTSTFNSHDDEYDGHFLSNENESHGDRV 277
           KP   P PS  V PP+ ST +      DG+  +N  +SH  +V
Sbjct: 386 KPLLPPKPSGLVSPPHASTKSGSFCSVDGNESANAEQSHPGKV 428


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 235 KPKGAPAPSNPVRPPNTSTFNSHDDEYDGHFLSNENESHGDRV 277
           KP   P PS  V PP+ ST +      DG+  +N  +SH  +V
Sbjct: 138 KPLLPPKPSGLVSPPHASTKSGSFCSVDGNESANAEQSHPGKV 180


>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 292 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 351
           ++ + +  +V+P  I+      K  P D  F + F  +      A+    + E++L+AN 
Sbjct: 815 VSSVVSSSTVLPSLISPLSNITK--PTDNVFFLEFKLLFREWSSALISGTSPEFILLANE 872

Query: 352 FRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVI 387
                  N+++    +  D G     ++R ++ PV+
Sbjct: 873 ITTQVPLNHRVAVWCLVVDSGQCPLGIVRESSGPVV 908


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 142 WTNFKAEFRSLCPREVD--MAT-VLYDIMSTN--SNKFTTYAEYARKSLLRLNIVKGLSD 196
           W+ ++ +  +  P ++D  + T +L+     N  ++K   Y E   +   R+N +K ++ 
Sbjct: 30  WSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTTHKLDIYEENDHELYQRINALKKINP 89

Query: 197 ELKTAIVIRG 206
           +LKT I + G
Sbjct: 90  KLKTQIAVGG 99


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 238 GAPAPSNPVRPPNTSTFNSHDDEYDGHFLSNENESH 273
           G P P  P  PP ++ ++ H  ++ GH+    +  H
Sbjct: 906 GLPGPPGPPGPPVSTFYHHHHHQHHGHYRRRRHYHH 941


>SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)
          Length = 240

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 122 GCLRGDAKTWLDEWVTGDRTWTNFKAEFRSLCPREVDMATVLYDIMSTNSNKFTTYAEYA 181
           G L   AK+  ++    ++ +    AE  S  PRE+ ++   Y  ++  S  FTT+ + +
Sbjct: 9   GILLVRAKSVTEQMFKQEKEFAKRIAEALSGLPREIRLSVAPYSNVADISIPFTTFTQES 68

Query: 182 RKSLLRLNIVK 192
            K++LR NI K
Sbjct: 69  -KNVLRENIDK 78


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 92  VHEFDAWCTEVDRARELNRWDDRECLGRIGGCLRGDAKTWLDEWVTGD-RTWTNFKAEFR 150
           + + + + T   R  E  RWDD   L  +   L G+A  W +        TW    A+ +
Sbjct: 192 IEDVNDFITRFQRMTEFYRWDDDRKLRALPLYLTGNASVWFNSHPRAALNTWDAALAQLK 251

Query: 151 SLCPREVDMATVLYDIMSTNSNKFTTYAEYA---RKSLLRLNI---------VKGLSDEL 198
           +          +   +      KF   A+Y    R+   RL +         V+GL   L
Sbjct: 252 NHFDSGASQWLLRQQLDQRVQGKFEPLAQYTADIRRLCQRLKLPKSEWLHQFVRGLRGPL 311

Query: 199 KTAIVIRGISDPQVKAATVNAKLQ 222
           K  +V++  +D   + A   A+L+
Sbjct: 312 KEYVVLQSPAD--FETAETQARLR 333


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 42  VADAETHGTGQASKALRDASVGT---ADRIVGALSSLLQVRSKHYYISNFDPSVHEFDAW 98
           V  A  H  G  +   ++A++ T   AD  V   + L+QV      IS+  P VH     
Sbjct: 328 VTTATKHPRGIGAIGQQEATIETKHKADMFVSHANKLIQVSRHAASISSNPPKVHIITCT 387

Query: 99  CTEVDR 104
           C+E+++
Sbjct: 388 CSELEK 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,168
Number of Sequences: 59808
Number of extensions: 787761
Number of successful extensions: 1726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 14
length of query: 590
length of database: 16,821,457
effective HSP length: 86
effective length of query: 504
effective length of database: 11,677,969
effective search space: 5885696376
effective search space used: 5885696376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)