Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001303-TA|BGIBMGA001303-PA|IPR006844|OST3/OST6,
IPR012336|Thioredoxin-like fold
         (590 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2    RGREGEGRLPVTAPLTSTPLLHPSAGGRTPTSASGANEV--SVADAETHGTGQ 52
            RGR  +G   +T+P   TPL    AG R   S   + ++  S  + E H  GQ
Sbjct: 1384 RGRNDDGSDRLTSP--PTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQ 1434


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 81  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 140

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + +N   +H
Sbjct: 141 ILMYNSADEGFDGTYQTNVVVTH 163


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 81  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 140

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + +N   +H
Sbjct: 141 ILMYNSADEGFDGTYQTNVVVTH 163


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 197 ELKTAIVIRGISDPQVK--AATVNAKLQSK----NLVEFLSVYVKPKGAPAPSNPVRPPN 250
           E+K  I ++ I D   K    T NA L+ +    NL    S Y   K      N +  P+
Sbjct: 13  EVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPD 72

Query: 251 TSTFNSHDDEYDGHFLSNENESH 273
              +NS D+ +DG + ++   +H
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTH 95


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 222  QSKNLVEFLSVYVKPKGAPAPSNPVRPPNTSTFNSHD 258
            Q   ++   +VY K   A  P++   PPN  T  + +
Sbjct: 1205 QPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHEASE 1241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,547
Number of Sequences: 429
Number of extensions: 7237
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 590
length of database: 140,377
effective HSP length: 61
effective length of query: 529
effective length of database: 114,208
effective search space: 60416032
effective search space used: 60416032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)