Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001303-TA|BGIBMGA001303-PA|IPR006844|OST3/OST6,
IPR012336|Thioredoxin-like fold
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0041 - 20169308-20169317,20169485-20170491 71 3e-12
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 33 0.84
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 33 0.84
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 31 1.9
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 31 2.6
07_03_0318 - 16721615-16722154 31 3.4
10_02_0046 + 4533959-4533988,4534061-4534136,4534225-4535111,454... 29 7.9
10_02_0003 + 4022220-4022900 29 7.9
07_03_1683 + 28634935-28635072,28635393-28635569,28635856-286360... 29 7.9
06_03_0030 - 15687877-15688083,15688177-15688471,15688551-156887... 29 7.9
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 7.9
>03_05_0041 - 20169308-20169317,20169485-20170491
Length = 338
Score = 70.9 bits (166), Expect = 3e-12
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 11/243 (4%)
Query: 301 VIPLNINKFKEYVKSP-PRDYSFVVMFTAMAPARRCAI-CQHVNDEYLLVANSFRFSAAY 358
VI L ++ +P PR YS +V F A + + + + E+ L++ SF
Sbjct: 43 VIHLTDTSITRFLSAPAPRPYSVLVFFDAASLHSKTDLHLPQLRREFALLSASFLAHNPA 102
Query: 359 NNKLFFGIVDFDEGSDIFQMLRLNTAP-VIMHFPAKGKPKPADTMDFERAGIHAEAIAKW 417
+ LFF ++F E F +N+ P V + P + ++ MD A+++A++
Sbjct: 103 SADLFFADIEFSESQHSFAQFGVNSLPHVRLVRPEHTRLAGSEQMDQSHFSRLADSMAEF 162
Query: 418 IQDRTDVQIR-VFRSPNYSA--AVAFSTLFIILAGFLYIRRNNLEFLYN-KQLWAVCAVF 473
++ RT +++ + R P S + LF++ FL R + E L++ +++W A+F
Sbjct: 163 VESRTGLEVGPIVRPPLVSRNQMILLVILFLVSIPFLIKRIMDGETLFHDRRVWMAGALF 222
Query: 474 FCFAMVSGQMWNQIRGPPFFHRTKTGP---VYINGGSHGQFVLESYIVAILNGAVVVGMI 530
F VSG M+ IR P F ++ P V+ GS Q E + V L V + MI
Sbjct: 223 IYFFSVSGGMYGIIRHTPMFITDRSDPNKLVFFYQGSGMQLGAEGFAVGFLYTLVGL-MI 281
Query: 531 LMI 533
M+
Sbjct: 282 AMV 284
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 32.7 bits (71), Expect = 0.84
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 10 LPVTAPLTSTPLLHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDASVGTADRIV 69
LPV P+ P P A P +A+ S A G G+A + D +R
Sbjct: 18 LPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGGGGGEADYEVSDDHRAARERHE 77
Query: 70 GALSSLLQVR 79
A+ LLQ R
Sbjct: 78 RAVQELLQRR 87
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 32.7 bits (71), Expect = 0.84
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 10 LPVTAPLTSTPLLHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDASVGTADRIV 69
LPV P+ P P A P +A+ S A G G+A + D +R
Sbjct: 18 LPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGGGGGEADYEVSDDHRAARERHE 77
Query: 70 GALSSLLQVR 79
A+ LLQ R
Sbjct: 78 RAVQELLQRR 87
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 230 LSVYVKPKGAPAPSNPVRPPNTSTFNSHDDEYDGHFLSNENESHGDR 276
L+VYV P A V ++T S++D ++G L++E +GDR
Sbjct: 11 LTVYVHPSNAADVRRAVSRQLSTTLFSYEDRFEGVLLAHEVVVNGDR 57
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 28 GRTPTSASGANEVSVADAETHGTGQASKALRDASVGTADRIVGALSSLLQVRSKHYYISN 87
G + +S++ A V + + G A V A G + + +VR+ H+ +
Sbjct: 91 GASSSSSASAPAVGEVEPPSRAVGALPPTSSKAVVLQARPGFGTVGTSCRVRANHFVVQL 150
Query: 88 FDPSVHEFDAWCTEVDRARELNR 110
D ++ +D R+RE NR
Sbjct: 151 ADKEIYHYDVAIAPELRSRERNR 173
>07_03_0318 - 16721615-16722154
Length = 179
Score = 30.7 bits (66), Expect = 3.4
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 13 TAPLTSTPLLHPSA--GGRTPTSASGANEVSVADAETHGTGQASKALRDASVGTADRI 68
TA T P A G T+A GA V+ E H G + A A GTAD++
Sbjct: 59 TAATAVTGATAPMAAHGATAATAAPGATSVTTGLHEYHAPGMVATAGAPAPAGTADKV 116
>10_02_0046 +
4533959-4533988,4534061-4534136,4534225-4535111,
4546711-4546746
Length = 342
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 30 TPTSASG-ANEVSVADAETHGTGQASKALRDASVGTADRIVGALSSL 75
T TSA+G + ++S A TG+A + + G+ADR+V A + L
Sbjct: 231 TSTSAAGWSQDLSTAPDAATDTGEAGGSAAAGTSGSADRVVKAAARL 277
>10_02_0003 + 4022220-4022900
Length = 226
Score = 29.5 bits (63), Expect = 7.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 5 EGEGRLPVTAPLTSTPLLHPSAGGRTPTSASGANEVSVADA 45
E G +AP S P L P+A G+ P +A A + A A
Sbjct: 15 EDRGASSASAPAPSLPPLAPTASGQVPNTADMAKAAAAARA 55
>07_03_1683 +
28634935-28635072,28635393-28635569,28635856-28636021,
28636093-28636481
Length = 289
Score = 29.5 bits (63), Expect = 7.9
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 211 QVKAATVNAKLQSKNLVEFLSVYVKPKGAPAPSNPVR--PPNTSTFNSHDDEYDGHFLSN 268
Q + +T ++ ++ ++ + P S + P +T+T N+ D+ Y + LSN
Sbjct: 167 QAQCSTFRGRIYNETNIDSAFATQRQANCPRTSGDMNLAPLDTTTANAFDNAYYTNLLSN 226
Query: 269 ENESHGDRV 277
+ H D+V
Sbjct: 227 KGLLHSDQV 235
>06_03_0030 -
15687877-15688083,15688177-15688471,15688551-15688721,
15688968-15689026
Length = 243
Score = 29.5 bits (63), Expect = 7.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 61 SVGTADRIVGALSSLLQVRSKHYYISNFDPSVHEFDAWCT---EVDR 104
S+GT + QVRS ++ I+ DP+V FD CT E+DR
Sbjct: 9 SLGTQAHWLHEWHCSYQVRSMNHKIAFLDPTVVNFDKQCTSEAEIDR 55
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 196 DELKTAIVIRGISDPQVKAATVNAKLQSKNLVEFLSVYVKPKGAPAPSNPVRPP 249
D +++RG DP+ + K K + E L V V P P P P +PP
Sbjct: 40 DVKNNRVIVRGKFDPEKLCKKIWCKA-GKIIKEILIVDVWPPPLPQPPPPCKPP 92
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,477
Number of Sequences: 37544
Number of extensions: 741089
Number of successful extensions: 1984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1975
Number of HSP's gapped (non-prelim): 12
length of query: 590
length of database: 14,793,348
effective HSP length: 86
effective length of query: 504
effective length of database: 11,564,564
effective search space: 5828540256
effective search space used: 5828540256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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