GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001303-TA|BGIBMGA001303-PA|IPR006844|OST3/OST6,
IPR012336|Thioredoxin-like fold
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarit...    70   5e-12
At1g11560.1 68414.m01327 OST3/OST6 family protein contains Pfam ...    55   2e-07
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr...    35   0.13 
At3g22380.1 68416.m02825 expressed protein                             33   0.70 
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro...    30   3.7  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   6.5  

>At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarity
           to SP|Q13454 N33 protein {Homo sapiens}; contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 346

 Score = 69.7 bits (163), Expect = 5e-12
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 22/253 (8%)

Query: 296 TAKKSVIPLNINKFKEYVKSP--PRDYSFVVMFTAMAPARRCAI-CQHVNDEYLLVANSF 352
           T++  VI L+ +   +++ S   PR YS +V F A     +  +  Q +  E+ +V+ SF
Sbjct: 44  TSESGVIHLDDHGISKFLTSASTPRPYSLLVFFDATQLHSKNELRLQELRREFGIVSASF 103

Query: 353 --RFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVI-MHFPA----KGKPKPADTMDFE 405
               + +   KLFF  ++F +    FQ+  +N  P I +  P+    + +    D  D+ 
Sbjct: 104 LANNNGSEGTKLFFCEIEFSKSQSSFQLFGVNALPHIRLVSPSISNLRDESGQMDQSDYS 163

Query: 406 RAGIHAEAIAKWIQDRTDVQIRVFRSPNYSAA--VAFSTLFIILAGFLYIRR--NNLEFL 461
           R    AE++A++++ RT +++   + P   +   +      I++A    I+R       L
Sbjct: 164 RL---AESMAEFVEQRTKLKVGPIQRPPLLSKPQIGIIVALIVIATPFIIKRVLKGETIL 220

Query: 462 YNKQLWAVCAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP---VYINGGSHGQFVLESYIV 518
           ++ +LW   A+F  F  V+G M N IR  P F + +  P   V+   GS  Q   E + V
Sbjct: 221 HDTRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNKLVFFYQGSGMQLGAEGFAV 280

Query: 519 AILNGAVVVGMIL 531
             L    VVG++L
Sbjct: 281 GFL--YTVVGLLL 291


>At1g11560.1 68414.m01327 OST3/OST6 family protein contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 343

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 16/250 (6%)

Query: 296 TAKKSVIPLNINKFKEYVKS--PPRDYSFVVMFTAMAPARRCAI-CQHVNDEYLLVANSF 352
           TA+  VI  N +   +++ S   PR YS ++ F A+       +       E+ LV+ +F
Sbjct: 40  TAESGVISFNNDDVSKFITSVSTPRPYSLIIFFDAVHLHGNSQLRLPEFRREFRLVSATF 99

Query: 353 ---RFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVI-MHFPAKGKPKPADTMDFERAG 408
                + +   KLFF  ++       F+   + + P I +  P       +D MD     
Sbjct: 100 ITNNNNESNGTKLFFCEIESTHSEASFRRFAVESLPHISLVSPTTENLTESDQMDGGDFT 159

Query: 409 IHAEAIAKWIQDRTDVQI-RVFRSPNYSAA-VAFSTLFIILAGFLYIRR--NNLEFLYNK 464
             AE++A++++ +T + +  + R P  S   +      II++  + I++       L++ 
Sbjct: 160 GLAESMAEFVERQTKLTVCSIQRPPLISKTQIGIIVAIIIISTPILIKKILKGETLLHDH 219

Query: 465 QLWAVCAVFFCFAMVSGQMWNQIRGPPFF---HRTKTGPVYINGGSHGQFVLESYIVAIL 521
           ++W V AVF  F  VSG M N IR  P +   +   +  V+    S  Q   E + V  L
Sbjct: 220 RIWLVGAVFVYFFSVSGTMHNIIREMPMYIKDYEDSSKFVFFIEESEMQLGAEGFFVGFL 279

Query: 522 NGAVVVGMIL 531
               VVG++L
Sbjct: 280 --YTVVGLLL 287


>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
           protein contains similarity to helix-loop-helix
           DNA-binding protein
          Length = 294

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 203 VIRGISDPQVKAATVNAKLQSKNLVEFLSVYVKPKGAPAPS--NPVRPPNTSTFNSHDDE 260
           V+  IS+ Q    ++ AK Q K   E LS  V P   P+P   +P +PP +   ++H+  
Sbjct: 143 VVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLSPLSSNHESS 202

Query: 261 YDGHFLSNENESHGD 275
                ++N   +  D
Sbjct: 203 VINELVANSKSALAD 217


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 12   VTAPLTSTPLLHPSAGGRTPTSASGA-NEVSVADAETHGTGQASKALRDASVGTA 65
            V +P TS+   + S   RT  SAS A N+   A   TH   Q SK L+ AS  ++
Sbjct: 1349 VGSPSTSSVSKNASGSPRTTASASSAANKGGQASTTTHSASQPSKNLQPASAASS 1403


>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
           protein
          Length = 196

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 14  APLTSTPLLHPSAGGRTPTSASGANEVSVADAETHGTGQASKALRDAS 61
           A  T  P   PS GG TP +A G    S +   T   G A+ +L  A+
Sbjct: 136 AGATPAPGSTPSTGGTTPPTAGGTTTPSGSSGTTTPAGNAASSLGGAT 183


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 240 PAPSNPVRPPNTSTFNSHDDEYDGHFLSN 268
           P P+ PV PPN +   + DD YD   + N
Sbjct: 491 PEPTKPVSPPNEAQGPTPDDPYDASPVKN 519


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,126
Number of Sequences: 28952
Number of extensions: 572119
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 6
length of query: 590
length of database: 12,070,560
effective HSP length: 85
effective length of query: 505
effective length of database: 9,609,640
effective search space: 4852868200
effective search space used: 4852868200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)