Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001302-TA|BGIBMGA001302-PA|IPR000245|ATPase, V0 complex,
proteolipid subunit C,, IPR002379|ATPase, F0/V0 complex, subunit C,
IPR011555|ATPase, V0 complex, proteolipid subunit C, eukaryotic
         (165 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             233   5e-62
SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3)                    35   0.039
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.16 
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  233 bits (570), Expect = 5e-62
 Identities = 125/162 (77%), Positives = 136/162 (83%), Gaps = 12/162 (7%)

Query: 4   NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 63
           + P Y  FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5   DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 64  AIYGLVVAVLIAGALQEPANYPLYKLVSGSVVKYRGFIHLGAGLAVGFSGLAAGFAIGIV 123
           AIYGLVVAVLI  ++ +  +Y LYK           F+ LGAGL+VG SGLAAGFAIGIV
Sbjct: 65  AIYGLVVAVLIGSSISK--DYTLYK----------SFLDLGAGLSVGLSGLAAGFAIGIV 112

Query: 124 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 165
           GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 113 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILTTK 154


>SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3)
          Length = 877

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 13  GVMGAASAIIFSALGAAYGTAKSGTGIA--------AMSVMRPELIMKSIIPVVMAG--I 62
           GV+G +S ++F       G  +S  G++         + + R  ++  S +  V+ G  +
Sbjct: 491 GVIGGSS-VVFVGRSVVTGVGRSVVGVSRVIVGSGVVVGISRSGVVCISFVVGVVVGYSV 549

Query: 63  IAIYGLVVAVLIAGALQEPANYPLYKLVSGSVV--KYRGFIHLGAGLAVGFSGLAAGFAI 120
           +A+Y  VV V++  ++    +   + +V  SVV    R  + +G+ + VG S        
Sbjct: 550 VAVYSSVVGVVVGNSVVGVCSGSSFVVVDSSVVVGVNRSGVVVGSSVVVGVSKSGVVVGC 609

Query: 121 GIVGDAGVRGTAQQPRLFVGMILILIFAEVL 151
            +V D    G      + V ++ +++    L
Sbjct: 610 SVVVDISKSGVVVGSSVVVALVEVVLLVRDL 640


>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 92  GSVVKYRGFIHLGAGLAVGFSGLAAGFAIGIVG 124
           G+ + ++ +   GAG+ VGF  LA G  +G+VG
Sbjct: 34  GTNIVWQWYKIFGAGMTVGFCNLACGICVGLVG 66


>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 103 LGAGLA-VGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLI 157
           +GAG A VG +G  AG  IG V  + + G A+ P    +LF   IL    +E +GL+ L+
Sbjct: 106 IGAGAATVGAAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLM 163

Query: 158 VAIYL 162
           +A  +
Sbjct: 164 MAFLI 168


>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1404

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 23  FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 78
           +S + A  G   +  G+  ++V+   + +  +I  V+  IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.145    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,388,640
Number of Sequences: 59808
Number of extensions: 147441
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 5
length of query: 165
length of database: 16,821,457
effective HSP length: 77
effective length of query: 88
effective length of database: 12,216,241
effective search space: 1075029208
effective search space used: 1075029208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)