Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001302-TA|BGIBMGA001302-PA|IPR000245|ATPase, V0 complex,
proteolipid subunit C,, IPR002379|ATPase, F0/V0 complex, subunit C,
IPR011555|ATPase, V0 complex, proteolipid subunit C, eukaryotic
         (165 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   277   4e-77
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.2  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  277 bits (679), Expect = 4e-77
 Identities = 143/163 (87%), Positives = 148/163 (90%), Gaps = 10/163 (6%)

Query: 3   ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 62
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 63  IAIYGLVVAVLIAGALQEPANYPLYKLVSGSVVKYRGFIHLGAGLAVGFSGLAAGFAIGI 122
           IAIYGLVVAVLIAG L+EP  Y L+K          GF+HLGAGLAVGFSGLAAGFAIGI
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFK----------GFVHLGAGLAVGFSGLAAGFAIGI 113

Query: 123 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 165
           VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 114 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
          protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 49 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKL 89
          L++ SII   + G I +    VAV +   L+ P NY L  L
Sbjct: 46 LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLLVSL 83


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 137 LFVGMI-LILIFAEVLGLYGLIVAIY 161
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 58  VMAGIIAIYGLVVAVLIAGALQEPANY 84
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 74  IAGALQEPANYPLYKLVSGSVV 95
           IA  L EP     Y+L +G+VV
Sbjct: 398 IARILDEPIELSGYRLTAGTVV 419


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 31  GTAKSGTGIAAMSVMRPELIMKSI 54
           GTAK G     M+V+ P L +  I
Sbjct: 547 GTAKMGPSYDPMAVVSPRLKVHGI 570


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 35 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 73
          +G  +A  S  RP+ ++K   P+VM   + I  ++  +L
Sbjct: 21 AGQVLAGSSSPRPKPLLKKEYPLVMDTKLKIIEILQFIL 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.145    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,950
Number of Sequences: 429
Number of extensions: 1193
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 140,377
effective HSP length: 53
effective length of query: 112
effective length of database: 117,640
effective search space: 13175680
effective search space used: 13175680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)