GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001302-TA|BGIBMGA001302-PA|IPR000245|ATPase, V0 complex,
proteolipid subunit C,, IPR002379|ATPase, F0/V0 complex, subunit C,
IPR011555|ATPase, V0 complex, proteolipid subunit C, eukaryotic
         (165 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.7  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.9  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 56  PVVMAGIIAIYGLVVAVLIAGALQEPANYP-LYKLVSG 92
           P+V   I+   G V   ++AG L  P   P  +K+++G
Sbjct: 80  PIVKYIILIDLGEVAVTVLAGILTTPFKLPYFWKMLTG 117


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 12  FGVMGAASAIIFSALGAAYGTAKSGT 37
           F + GAAS+ +F  L    G+   GT
Sbjct: 271 FSICGAASSYLFIMLQLDIGSKTQGT 296


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 32   TAKSGTGIAAMSVMRPEL--IMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANY 84
            T   GT   A  + + +   I+ + + +V+  + A+  ++VA+++   L+   NY
Sbjct: 1583 TVTGGTIAPAREIPKEDTFQIILANLNLVVPVVAAVLVIIVAIIVICVLRGKGNY 1637


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1   MAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMA 60
           +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+++
Sbjct: 117 VGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVLLS 175

Query: 61  GIIAIYGL 68
           G+IA+ G+
Sbjct: 176 GLIAMCGM 183


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1   MAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMA 60
           +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+++
Sbjct: 350 VGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVLLS 408

Query: 61  GIIAIYGL 68
           G+IA+ G+
Sbjct: 409 GLIAMCGM 416


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1   MAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMA 60
           +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+++
Sbjct: 350 VGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVLLS 408

Query: 61  GIIAIYGL 68
           G+IA+ G+
Sbjct: 409 GLIAMCGM 416


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 141 MILILIFAEVLGLYGLI 157
           MIL+L+    LGL GLI
Sbjct: 1   MILVLLVIVNLGLNGLI 17


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.145    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,208
Number of Sequences: 317
Number of extensions: 1184
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 114,650
effective HSP length: 52
effective length of query: 113
effective length of database: 98,166
effective search space: 11092758
effective search space used: 11092758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)