GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001302-TA|BGIBMGA001302-PA|IPR000245|ATPase, V0 complex,
proteolipid subunit C,, IPR002379|ATPase, F0/V0 complex, subunit C,
IPR011555|ATPase, V0 complex, proteolipid subunit C, eukaryotic
         (165 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    24   2.1  
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    23   3.7  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    23   6.4  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    23   6.4  

>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A
          homeotic protein protein.
          Length = 308

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 10 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 42
          P  GV G+AS   F    AA   A +G G+ ++
Sbjct: 42 PPMGVPGSASIAQFYQQAAAVSAASAGVGVDSL 74


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 1344

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 38  GIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 86
           G  A S+ R +L M  ++    AGI++ YG+ +A ++    QEP    L
Sbjct: 508 GQHACSIAR-QLGMARVVMHKYAGILSAYGMALADVVY-ETQEPCGLEL 554


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 104 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 136
           G G   G  G+  G  + + G AGV G+ +  R
Sbjct: 557 GGGGGGGGGGVGGGIGLSLGGAAGVDGSRRIKR 589


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 104 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 136
           G G   G  G+  G  + + G AGV G+ +  R
Sbjct: 558 GGGGGGGGGGVGGGIGLSLGGAAGVDGSRRIKR 590


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.327    0.145    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,807
Number of Sequences: 2123
Number of extensions: 4963
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 516,269
effective HSP length: 59
effective length of query: 106
effective length of database: 391,012
effective search space: 41447272
effective search space used: 41447272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)