GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001301-TA|BGIBMGA001301-PA|IPR002159|CD36 antigen
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    33   0.074
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    29   0.91 
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   3.7  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    27   4.8  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   6.4  

>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
          Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 33.1 bits (72), Expect = 0.074
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 6  VKLPMPLDFKIYVFNVTNRDAINQGEKPNLKEIGPYVYKQYREKIILGYGDNDTI 60
          + LP+P       +N +    + +G + + ++ GP + KQYR K +LGYG   T+
Sbjct: 1  MSLPLPSFLSSNNYNSSETSLLTEGPESDEEDEGPLL-KQYRLKNMLGYGACSTV 54


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 18  VFNVTNRDAINQGEKPNLKEIGPYVYKQYREKIILGYGDNDTIKYNLKKTFVFD----PV 73
           + +VT+   +  GE  N+ +IG Y  +Q RE++  G  D   ++   K   +FD    P+
Sbjct: 146 LMSVTSWIDLMSGETWNVMKIG-YQLRQVRERLAKGLVDKGILRNEKKNFLLFDMPTHPI 204

Query: 74  ASGDLREDDELTVIN 88
           A   +++  +  V++
Sbjct: 205 ADTSIKDSIKKRVVS 219


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 191 VRGTENLSDLGHVISYQGKRIMSAWDDQYCGQLNGTDSTIFPPLEDGNIPEKLYTFEPDI 250
           V  T   + +  V+S    R++      YC  +NG DS IF P E   + + +   E   
Sbjct: 237 VESTTEATQMPIVMSKNSSRVLGT--SSYC-DVNGMDSIIFEPTESSALTDDILFAEDPG 293

Query: 251 CRSLFAS 257
             S+ ++
Sbjct: 294 TESIIST 300


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 27 INQGEKPNLKEIGPYVYKQYREK--IILGYGDNDTIKYNLKK 66
          +N G   NL E+GP++ + + +   I LGY  N   K+  K+
Sbjct: 38 MNMGGPSNLDEVGPFLERLFTDGDIIPLGYFQNSLGKFIAKR 79


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 223 LNGTDSTIFPPLEDGNIPEKLYTFEPDICRSLFASLVGKDTLF 265
           LNG D  I+P  E  N   K   ++     S F   VGK+ +F
Sbjct: 426 LNGVDDVIYPNPELANEWAKAAAYKNHHLASTFVQDVGKEDVF 468


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,176
Number of Sequences: 5004
Number of extensions: 81264
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 6
length of query: 412
length of database: 2,362,478
effective HSP length: 74
effective length of query: 338
effective length of database: 1,992,182
effective search space: 673357516
effective search space used: 673357516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)