GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001301-TA|BGIBMGA001301-PA|IPR002159|CD36 antigen
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   5.1  

>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 103 PAAVGMINRALEQFFTNLTDPF-QTVKVKDLFFDGLFLNCE 142
           P +  +INR L   ++NL DP  QTVK   L FD L L+ E
Sbjct: 395 PFSRDVINRILRIIWSNLEDPLSQTVKQVHLIFD-LLLDIE 434


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,098
Number of Sequences: 37544
Number of extensions: 474093
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 1
length of query: 412
length of database: 14,793,348
effective HSP length: 84
effective length of query: 328
effective length of database: 11,639,652
effective search space: 3817805856
effective search space used: 3817805856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)