GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001301-TA|BGIBMGA001301-PA|IPR002159|CD36 antigen
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48200.1 68418.m05954 hypothetical protein                          33   0.46 
At5g49820.1 68418.m06170 expressed protein contains Pfam domain,...    28   9.9  

>At5g48200.1 68418.m05954 hypothetical protein 
          Length = 216

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 110 NRALEQFFTNLTDPFQTVKVKDLFFDGLFLNCEGDNTALGLICGKI 155
           N  L++F   +  PF+T     L   GL+ N EG  TA+   CG +
Sbjct: 55  NTFLDRFVAQVLHPFKTFPCTKLRDFGLYGNVEGSKTAMNWNCGSL 100


>At5g49820.1 68418.m06170 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 497

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 232 PPLEDGNIPEKLYTFEPDICRSLFASLVGKDTLFNISTY 270
           P L++GNI EK++TF     R +      KD   + STY
Sbjct: 336 PSLQEGNIQEKIFTFPWVDDRPVMLGARFKDAFQDPSTY 374


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,758,309
Number of Sequences: 28952
Number of extensions: 414926
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 2
length of query: 412
length of database: 12,070,560
effective HSP length: 83
effective length of query: 329
effective length of database: 9,667,544
effective search space: 3180621976
effective search space used: 3180621976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)