Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001300-TA|BGIBMGA001300-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR009126|Cholecystokinin receptor
         (280 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    31   0.65 
At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase...    30   2.0  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    29   2.6  
At4g07960.1 68417.m01276 glycosyl transferase family 2 protein s...    29   2.6  
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot...    29   2.6  

>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 175 SPIMLVSTLQPMRGNDQNTSSGTPQERECSIRKSCNNVSVTSM 217
           SP M  + L        +T S TP+E E S R S NN+  T+M
Sbjct: 319 SPAMSATALLQKAAQMGSTKSTTPEEEERSSRSSYNNLITTTM 361


>At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 492

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 169 LSLILNSPIMLVSTLQPMRGNDQNTSSGTPQERE-CSIRKSCNNVSVTSMED 219
           +S +L+  +MLV++L P  G D   +      +E C+++++  N+ V + E+
Sbjct: 426 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEE 477


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 190 DQNTSSGTPQERECSIRKSCNNV-SVTSMEDLSHEEIVTSYVLAHVAQFDSRLITWHLLA 248
           DQ   S  P+ERE  ++ S + V S+    D+  + ++ S V+  V+  D  LI    +A
Sbjct: 535 DQEIRSSPPEERELDVKYSTSQVSSLKEDSDVKEQSVLQSTVVNEVS--DKDLIVETKMA 592

Query: 249 EIQ 251
           +I+
Sbjct: 593 KIE 595


>At4g07960.1 68417.m01276 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 699

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 187 RGNDQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDSRLITWHL 246
           +GN+ NT  GTP   +    ++ NN S+  +E  SH++ +           ++R +TW L
Sbjct: 10  KGNNNNTRKGTPVVVK---MENPNNWSMVELESPSHDDFLVR-THEKSRNKNARQLTWVL 65

Query: 247 LAEIQHQNLNNLLIRGHPALACKSAV 272
           L +  H+    L   G    A  +AV
Sbjct: 66  LLK-AHRAAGCLTSLGSALFALGTAV 90


>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 661

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 43  RFILPPYFVIFLLSICGNCL--VIATLASNRRMRTVTNVYLLNLAISDFLLGVFCL 96
           +F+L    V F+L + GNC+  +   +     + T+ N+ +LN + S+ L  V C+
Sbjct: 357 KFLLGLLRVAFILGVDGNCVKKLEKRIGMQLELATLDNLLILNYSDSETLYNVDCV 412


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,270,973
Number of Sequences: 28952
Number of extensions: 233292
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 5
length of query: 280
length of database: 12,070,560
effective HSP length: 80
effective length of query: 200
effective length of database: 9,754,400
effective search space: 1950880000
effective search space used: 1950880000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)