GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001300-TA|BGIBMGA001300-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR009126|Cholecystokinin receptor
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    26   5.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   6.9  

>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 39  AYEWRFILPPYFVIFLLSICGNCLVIATLASNRRMRTVTNVYLLNLAIS 87
           A ++   +P + ++F+++  GN LVI    S    RT +N+  LN ++S
Sbjct: 255 AKKFGMTMPEFSLLFIMA-SGNGLVIPIPGSTSVSRTKSNLNALNKSLS 302


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 3   DPDISYNSSLLRMREITSTLAPFTTIRNASVAKPNN 38
           +P   YNSS+      +S++APF   R  SV+  ++
Sbjct: 227 NPYFQYNSSMTAPSSSSSSVAPFVPRRQFSVSSASD 262


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,992
Number of Sequences: 5004
Number of extensions: 46869
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 2
length of query: 280
length of database: 2,362,478
effective HSP length: 72
effective length of query: 208
effective length of database: 2,002,190
effective search space: 416455520
effective search space used: 416455520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)