GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001300-TA|BGIBMGA001300-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR009126|Cholecystokinin receptor
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   1.8  
11_06_0715 + 26552962-26553510,26553578-26555746                       28   9.6  
05_07_0137 + 27955876-27956000,27957626-27957714,27957963-279580...    28   9.6  
02_01_0578 - 4287201-4287479,4288360-4288489,4288574-4288752           28   9.6  

>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 181 STLQPMRGNDQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 224
           S+ + +   D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 516 SSWETISHEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>11_06_0715 + 26552962-26553510,26553578-26555746
          Length = 905

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 149 KSRKWQTQCHAYKMIAMVWILSLILNSPIMLVSTLQPMRGNDQNTSSGTPQE 200
           +S K + +CHA+  I+  + +  +L   I  +   + +RGN  +  +G  Q+
Sbjct: 201 RSEKEKFECHAWVSISQTYSIKAVLKCLINELDEKKSIRGNISDMDTGGLQD 252


>05_07_0137 +
           27955876-27956000,27957626-27957714,27957963-27958054,
           27959338-27959419,27960038-27960454,27960539-27960876,
           27961066-27961233
          Length = 436

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 114 LCKLIPFLQAVSVSVDVWTLVAISLER 140
           L +LIPFL+A++V+ DV  ++A  L R
Sbjct: 405 LVELIPFLEAIAVADDVRPIIAQMLGR 431


>02_01_0578 - 4287201-4287479,4288360-4288489,4288574-4288752
          Length = 195

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 90  LLGVFCLPFTLVGQIYRRFLFGAGLCKLIPFLQAVSVSVDVWTLVAISLERYFAICRPLK 149
           L+GV  L ++ +  IY RF   A    L  FL A  ++V    L A S  R F +  P  
Sbjct: 124 LIGVEALQWSKLCNIYTRFCEQAAAGMLCSFLAAAGMAV----LSAFSARRLFRLYSPAG 179

Query: 150 SRK 152
            R+
Sbjct: 180 HRR 182


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,644,174
Number of Sequences: 37544
Number of extensions: 278404
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 4
length of query: 280
length of database: 14,793,348
effective HSP length: 81
effective length of query: 199
effective length of database: 11,752,284
effective search space: 2338704516
effective search space used: 2338704516
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)