Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001299-TA|BGIBMGA001299-PA|IPR013057|Amino acid
transporter, transmembrane
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    93   9e-20
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    54   4e-08
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   2.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   3.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   6.7  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   8.8  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 92.7 bits (220), Expect = 9e-20
 Identities = 89/353 (25%), Positives = 163/353 (46%), Gaps = 32/353 (9%)

Query: 10  SILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKR 69
           ++L LLKS +G+G+L +P AFK  GLV      ++ G V +H   +L+     I    K 
Sbjct: 280 AVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVG-VLSHICFLLL-----IQTRMKV 333

Query: 70  PSLSFAETCGAAFMYGPKRLRSWSGAIQKFVDYSLSVTYLSVLCVYVVFIGSSLKEALDV 129
           P  SF +  G   +YGP         ++  +  S+ V+ +     Y+ F+ S+L+  + V
Sbjct: 334 PG-SFGDIGGT--LYGPH--------MRFAILASIVVSQIGFSSAYISFVASTLQACVKV 382

Query: 130 YMPGY-QLSIQAYCALSLVPLVVVCQIRNLKYLVPFSAIANALIFLVFAITLYYMFFDLP 188
               + +  +  +  +  +  V +  +R +  L   + IA+  +F++  I LY  F+D+ 
Sbjct: 383 ISTTHREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIAD--VFILLGI-LYLYFWDVI 439

Query: 189 PVSDR----VMVANVSTWPLFLSTVIFAMEGIGVVMPVENEMANPRRFLGCPGVLNTSMF 244
            ++ +    V + N + + LF+   IF  EGI +++P++ +MA P+     P +L   M 
Sbjct: 440 TLATKGIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMA 496

Query: 245 IVITLXXXXXXXXXXXXXDDVKGSVTLNLPQDEIIAQSAKLIMAFVIYLTYALQFYVPME 304
            +  L               VK  V LN+P+        + + A  I L+  LQ +  + 
Sbjct: 497 AISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTV-IIQFLYAIAILLSTPLQLFPAIA 555

Query: 305 IITRMLATR--KSNSYENLIQITIRTCLVTLTVAIG-AAFPNLELVIGLVGAI 354
           II + + TR  K N      +  +R  +V L + I  A    L+L + +VG++
Sbjct: 556 IIEQGIFTRSGKRNRKIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMVGSV 608


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 72/367 (19%), Positives = 144/367 (39%), Gaps = 35/367 (9%)

Query: 10  SILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKR 69
           S+++L  + LG+GIL++P AF  +GL+ G +  + + F     ++ +     Q      R
Sbjct: 24  SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFV----SQCAARLPR 79

Query: 70  PSLSFAETCGAAFMYGPKRLRSWSGAIQKFVDYSLSVTYLSVLCVYVVFIGSSLKE---A 126
              SFA      F            ++    D S++V    V   Y+V +G  + +   +
Sbjct: 80  GKASFAAVAKHTF-----------PSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQIAPS 128

Query: 127 LDVYMPGYQLSIQAYCALSLVPLVVVCQIRNLKYLVPFSAIA-NALIFLVFAITLYYMFF 185
           L +  P + L  Q +   +L  L  +  ++ L  L   S I+  AL +LVF +  +++  
Sbjct: 129 LGLSSPMF-LRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISLIALCYLVFIVLYHFIIG 187

Query: 186 DLPPVSDRVMVAN-----VSTWPLFLSTVIFAMEGIGVVMPVENEMANPRRFLGCPGVLN 240
           D      R  V       +S  P+F+           V+  V N       F     +++
Sbjct: 188 DTVKGEIRYFVPESGFGYLSVLPVFVFGFTCHQNAFSVINEVRNFSQGFVNFTMFTAIIS 247

Query: 241 TSMFIVITLXXXXXXXXXXXXXDDVKGSVTLNLPQDEIIAQSAKLIMAFVIYLTYALQFY 300
           +++  ++                   G++        I     KL +  ++  +Y LQ +
Sbjct: 248 STLLYLLVAITGYLSFGSL-----ASGNIIAMYDNTSIWIIGGKLAIVVLVLFSYPLQCH 302

Query: 301 VPMEIITRMLATRKSNSYENL---IQITIRTCLVTLTVAIGAAFPNLELVIGLVGAIFFS 357
                + +  A R+S S  ++       I  C++  T ++     +LE+V+  VG+   +
Sbjct: 303 PCRNSVYQ--AIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFVGSTGST 360

Query: 358 TLGLFIP 364
            +   +P
Sbjct: 361 FISFILP 367


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 89  LRSWSGAI---QKFVDYSLSVTYLSVLCVYVVFIGSSLKEALDVYM 131
           L +W+ A+   +K + YS  + +L  LC+ +V    ++K + DVY+
Sbjct: 804 LVTWADALLIQKKSLTYSSFLAFLVKLCLDIVLTPQNIKTSTDVYI 849


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 264 DVKGSVTLNLPQDEIIAQSAKLIMAFVIYLTYALQ 298
           D++GS+ L L  D +  Q A   MA + ++T  L+
Sbjct: 82  DIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGLE 116


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 304 EIITRMLATRKSNSYENLIQITIRTCLVTLTVAIGAAFPN-LELVIGLV 351
           + +TR++   +S+  +  ++  I +C   + +AIGAAF   LE V+ L+
Sbjct: 682 DFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTYLEAVMVLL 730


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 141 YCALSLVPLVVVCQIRNLKYLVPFSAIANALIFLVFAITLYYM 183
           Y   SL+  +++C       ++ F+A+A  LI+  ++  L Y+
Sbjct: 571 YPVYSLLVTIMICYSIIAPIIIGFAAVAFVLIYFAYSYNLIYV 613


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 13  HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAG 46
           HL+K+ +  G + M  A++   LV  V+G + AG
Sbjct: 328 HLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAG 361


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.141    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,045
Number of Sequences: 5004
Number of extensions: 63871
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 7
length of query: 429
length of database: 2,362,478
effective HSP length: 75
effective length of query: 354
effective length of database: 1,987,178
effective search space: 703461012
effective search space used: 703461012
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)