Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001299-TA|BGIBMGA001299-PA|IPR013057|Amino acid
transporter, transmembrane
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   6.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 182 YMFFDLPPVSDRV--MVANVSTWPLFLSTVIFAMEGIGVVM 220
           Y F+D    +  +  ++AN+ TW  F+  V+  +   G V+
Sbjct: 29  YYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGYVL 69


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 159 KYLVPFS--AIANALIFLVFAITLYYMFFDLP 188
           +Y+ P S   IA ALI L   +TL +M  + P
Sbjct: 620 RYISPASQVCIAAALIALQIVLTLVWMIIEPP 651


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 159 KYLVPFS--AIANALIFLVFAITLYYMFFDLP 188
           +Y+ P S   IA ALI L   +TL +M  + P
Sbjct: 710 RYISPASQVCIAAALIALQIVLTLVWMIIEPP 741


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,345
Number of Sequences: 429
Number of extensions: 3931
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)