Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001298-TA|BGIBMGA001298-PA|IPR003409|MORN motif
         (140 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   1.8  
AF260821-1|AAG02019.1|  134|Tribolium castaneum alpha-esterase l...    22   2.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   4.1  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    20   9.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 11 KTGAYKYEDGTRYVGEWNAKGQKH 34
          K  AY  E   R+ G+WN     H
Sbjct: 60 KRAAYDCEGVIRHHGQWNYSPDNH 83


>AF260821-1|AAG02019.1|  134|Tribolium castaneum alpha-esterase like
           protein E2 protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 90  GLVTFNDGSNGFPRNEGF 107
           G + F D S G P N GF
Sbjct: 114 GFLRFEDQSLGVPGNAGF 131


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 48  DGALIGGLCSGLGVMAFPDGAKYEGEF 74
           D  + G    G GVM F +  ++ G++
Sbjct: 280 DAGMSGPYTKGYGVMGFNEICEFTGDW 306


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 90  GLVTFNDGSNGFPRNEG 106
           G ++F D S G P N G
Sbjct: 118 GFLSFEDVSLGVPGNAG 134


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.143    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,460
Number of Sequences: 317
Number of extensions: 1595
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 114,650
effective HSP length: 51
effective length of query: 89
effective length of database: 98,483
effective search space:  8764987
effective search space used:  8764987
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)