Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001297-TA|BGIBMGA001297-PA|undefined
         (522 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.7  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   5.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   5.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 197 ENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGS 240
           E+NNG+S  + +   K   KS D R   N++     P     GS
Sbjct: 719 ESNNGSSPSVLNAIEKLIEKSFDSRSRQNSSFPGHGPTTAPMGS 762


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 289 LDRFGARRTEKIYLQGGGTF 308
           LD+ GA +   +Y  GGGTF
Sbjct: 13  LDKKGAEQNILVYDLGGGTF 32


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 199 NNGTSKDIRHKPRKTKRKSRD 219
           NNGT+K++R     T+ K+ D
Sbjct: 115 NNGTNKNMRRLSTTTQNKNDD 135


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 198 NNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSK 243
           NNN        + R  KRK+     D+ +    VSP+V K  S+ +
Sbjct: 89  NNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEV-KDSSRDR 133


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 456 PLVHNITGNLTTPTIPT-FYHTWTHFSIW 483
           P +H  TG+ ++PTI +  Y    + SIW
Sbjct: 191 PQLHVSTGSTSSPTIASATYTNSANSSIW 219


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,299
Number of Sequences: 317
Number of extensions: 4857
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 522
length of database: 114,650
effective HSP length: 60
effective length of query: 462
effective length of database: 95,630
effective search space: 44181060
effective search space used: 44181060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)