Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001297-TA|BGIBMGA001297-PA|undefined
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    32   0.17 
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    31   0.52 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      30   0.90 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   1.2  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    29   1.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   2.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   2.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   2.8  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    28   3.6  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    27   4.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   6.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   6.4  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   8.4  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   8.4  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   8.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   8.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   8.4  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 168 EKVDDY-LKEYNKDEVVTLSGELEIEH-NDFENNNGTSKD-IRHKPRKTKRKSRDERRDT 224
           E  +DY L    +D V T+SG+ E E  ++ E+N+ + +D +   P K  +  +   +D 
Sbjct: 132 ESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDE 191

Query: 225 NANGRDVSPKVFKTGSKSKQGKSVR 249
           +      SPK   T  +  +G  V+
Sbjct: 192 SEQEEAASPKKNNTKKQKVEGTPVK 216


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 188 ELEIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKS 247
           E EI  N F N+  + +D+   P K K  S   + ++N +G    P+  +    +    S
Sbjct: 200 EEEISFNSFSNSLNSEEDVCVSPMKPKEVSLMGKANSNRSGHSHQPQSTQFSPPANDNIS 259

Query: 248 VRPTDLSAMLQTLES 262
             P+  + +   L+S
Sbjct: 260 KLPSSFTIVNDPLKS 274


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 171 DDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGR 229
           +D   + ++DE  TL  +   +  DF  N G ++ + HK  + K    D+  D + NG+
Sbjct: 64  EDMFSDTSEDEKRTLPNDEAQKRRDFIEN-GDAERLAHKGLRNKEVLNDDSDDEDDNGK 121


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 61  KSKRGSWIKSEHESLDTELPIHDQIKQDILGFVEKEIKKSDKNPSFVFYSH-DPNGLDEK 119
           K  + S   S+++S     P  D++ ++++   +K  KKS K  +  F +  D   ++E+
Sbjct: 42  KLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEE 101

Query: 120 FLKSLSRPSSGHKEXXXXXXXXXXXXXXXXXXXXXXXFEIPGSSLSALEKVDDYLKEYNK 179
             +   +P   +K+                        E    S    +K     K  + 
Sbjct: 102 EEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDD 161

Query: 180 DEVVTLSGELEIEHNDFENNNGTSK--DIRHKPRKTKRKSRDERR 222
                  G++E    D +    + +  D   K RKT++K    R+
Sbjct: 162 GSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARK 206


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 204 KDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLSAMLQTLESS 263
           K I  K ++TK+K    R         +S     + ++ +   S+ PT  S+M +    +
Sbjct: 111 KAIAPKKKQTKQKKPSVRGRRGRKPSSLSSSTLHSVNEKQPNSSISPTIESSMNKV---N 167

Query: 264 IPYHEDYID-NPF-SSPSPVTSPNDERL 289
           +P  E+ +   P  +SP+ + SPND  +
Sbjct: 168 LPGAEEQVSATPLPASPNALLSPNDNTI 195


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 200 NGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGK-SVRPTDLSAMLQ 258
           N T ++  H  R     SR        + R   P   + G +S+  + S  P ++     
Sbjct: 16  NETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLEVK---- 71

Query: 259 TLESSIPYHEDYIDNPFSSPSPVTSPND 286
                +P   +Y D+ F+S S + S  D
Sbjct: 72  ----KLPVENEYFDSKFASASSMPSSKD 95


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 164 LSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRD 223
           L  +EK+++ L E +K  +     + EI+++     NGT    ++ P K  +   D+  +
Sbjct: 786 LENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSVQNGTRSVSKNTPEKETKV--DKIDN 843

Query: 224 TNANGRDVSPKVFKTGS---KSKQGKSVRPTDLSAMLQTLESSIPYHEDYIDNPF 275
            +    + SP   +T S   K+   K V   +L ++ + L+ S   + D+  +PF
Sbjct: 844 VSKKDVETSPGSCETSSAFAKTYAEKEVTSINLPSVRKPLDES---YYDHSISPF 895


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 198  NNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTG-SKSKQGKSV 248
            NNN T+           R S D +RD    G+D + +   +G S S+Q  ++
Sbjct: 1487 NNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGESNSRQNNAI 1538


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 228 GRDVSPKVFKTGSKSKQGKSVRPTDLS-AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
           G   S   F+TG K    K    TD   A ++ +   +  ++DY+  P  +P     PN 
Sbjct: 266 GSGSSVNEFRTGIKCGVVKVNIDTDTQFAYVEGVRDYVLKYKDYLMTPVGNPEGADKPNK 325

Query: 287 ERLD 290
           ++ D
Sbjct: 326 KKFD 329


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 199 NNGTSKDIRHKPRKTKRKSRDERRDTNANGR---DVSPKVFKTGSKSKQGKSVRP 250
           NNG +  I++  + T + S       + NG+   ++ PK  KT    K  KS  P
Sbjct: 127 NNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSALP 181


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 188 ELEIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKS 247
           E     + F     T  D+RH      RK+      +++N  + S K+ K  S+S + KS
Sbjct: 611 ETTASSDSFRKYANTLNDLRHLKSSRNRKATSNETQSSSNSTETS-KLSKNVSESGKDKS 669


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 203 SKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
           SKD   KP K   K  +E+ +   + +DV  K+ +       GK
Sbjct: 525 SKDTNEKPAKDDNKEANEKAE-KVDSKDVKEKIEEAADLQNSGK 567


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 168 EKVDDYL--KEYNKDEVVTLSGELEIEHNDFENNNGTSKDI 206
           E +D+Y   +E  + EV T   ELE+   DF + N  ++ I
Sbjct: 852 ESIDNYEQNREALESEVATAEAELELLKEDFASENSKTEKI 892


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 207 RHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTD 252
           R  P+   R + DER     +    +PKV     + KQGKS  P+D
Sbjct: 228 RLSPQPYVRPTSDER-PIETDSSVSAPKVANHDEELKQGKSTSPSD 272


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 190 EIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVR 249
           ++E ++FE  N T K ++ KP +  +K + E       G+ +  +  K+ ++  Q    R
Sbjct: 163 DVEEDEFEPEN-TRKKLQ-KPIEKPKKEKIEATPKIDGGKRLKNE--KSSAEISQTSKQR 218

Query: 250 PTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSP 284
           P+  SA ++             DN   SPSP+ SP
Sbjct: 219 PSRRSARVRMAT----------DNAQKSPSPIPSP 243


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 305 GGTFTAVSRDRILQPQR-SRDGDKYLSLADHTPLDVALMLQKAWKS 349
           G T+T +S +RIL P+   + GD+Y  L  +    V L  QK  KS
Sbjct: 588 GLTYTTMSDERILNPKEVQKIGDEYF-LISNPKEKVQLSYQKMSKS 632


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 254 SAMLQTLESSIPYHEDYIDNPFSSPSPVTSPNDERLDRFGARRTEKIYLQGGGTFT 309
           S+ +  L SS   +   + +P  S    ++ N     RFGA  ++  Y++G G+ +
Sbjct: 390 SSPINRLSSSFKQYTSSLKSPGLSTRTSSTMNSLNSSRFGAYFSKSRYVEGSGSMS 445


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,498
Number of Sequences: 5004
Number of extensions: 96154
Number of successful extensions: 317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 21
length of query: 522
length of database: 2,362,478
effective HSP length: 76
effective length of query: 446
effective length of database: 1,982,174
effective search space: 884049604
effective search space used: 884049604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)