Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001297-TA|BGIBMGA001297-PA|undefined
(522 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC094683-1|AAH94683.1| 1305|Homo sapiens EIF4G3 protein protein. 36 0.26
BC030578-1|AAH30578.1| 515|Homo sapiens EIF4G3 protein protein. 36 0.26
AL672037-2|CAI16194.1| 630|Homo sapiens eukaryotic translation ... 36 0.26
AL627311-3|CAI14554.1| 217|Homo sapiens eukaryotic translation ... 36 0.26
AL627311-2|CAI14553.1| 1585|Homo sapiens eukaryotic translation ... 36 0.26
AL627311-1|CAI14552.1| 630|Homo sapiens eukaryotic translation ... 36 0.26
AL606477-7|CAI12534.1| 1585|Homo sapiens eukaryotic translation ... 36 0.26
AL358392-3|CAI12156.1| 217|Homo sapiens eukaryotic translation ... 36 0.26
AL358392-2|CAI12155.1| 1585|Homo sapiens eukaryotic translation ... 36 0.26
AL358392-1|CAI12154.1| 630|Homo sapiens eukaryotic translation ... 36 0.26
AF012072-1|AAC02903.2| 1585|Homo sapiens eIF4GII protein. 36 0.26
BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein. 35 0.61
BC046222-1|AAH46222.2| 648|Homo sapiens RTTN protein protein. 35 0.61
AK126538-1|BAC86583.1| 1004|Homo sapiens protein ( Homo sapiens ... 35 0.61
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 33 1.9
AL031847-13|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 33 1.9
AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens ... 33 1.9
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 33 1.9
AY331186-1|AAQ97141.1| 1231|Homo sapiens NPF/calponin-like prote... 33 3.2
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 32 4.3
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 32 4.3
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 32 4.3
BC048125-1|AAH48125.1| 304|Homo sapiens C15orf33 protein protein. 32 4.3
AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif prot... 32 4.3
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 32 4.3
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 32 4.3
AK057362-1|BAB71451.1| 508|Homo sapiens protein ( Homo sapiens ... 32 4.3
AB209119-1|BAD92356.1| 1780|Homo sapiens eukaryotic translation ... 32 4.3
AL158217-11|CAI22163.1| 854|Homo sapiens espin protein. 32 5.7
AL031848-3|CAI19773.1| 854|Homo sapiens espin protein. 32 5.7
U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein. 31 7.5
U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein. 31 7.5
M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein. 31 7.5
BC067349-1|AAH67349.1| 165|Homo sapiens TOP1 protein protein. 31 7.5
BC058001-1|AAH58001.1| 454|Homo sapiens ANKRD11 protein protein. 31 7.5
AY533563-1|AAS45544.1| 2663|Homo sapiens ankyrin repeat-containi... 31 7.5
AY373756-1|AAR25661.1| 2664|Homo sapiens ankyrin repeat-containi... 31 7.5
AL158217-1|CAI22151.1| 187|Homo sapiens espin protein. 31 7.5
AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I p... 31 7.5
AL031848-1|CAI19771.1| 187|Homo sapiens espin protein. 31 7.5
AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I p... 31 7.5
BC004475-1|AAH04475.1| 164|Homo sapiens TOP1 protein protein. 31 9.9
AK001588-1|BAA91774.1| 148|Homo sapiens protein ( Homo sapiens ... 31 9.9
AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein. 31 9.9
AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein. 31 9.9
AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q... 31 9.9
>BC094683-1|AAH94683.1| 1305|Homo sapiens EIF4G3 protein protein.
Length = 1305
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>BC030578-1|AAH30578.1| 515|Homo sapiens EIF4G3 protein protein.
Length = 515
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 140 QQQPPPAKREKKTIRIRDPNQGGKDITEEIISGGGSRNPTPPIGRPTSTPTPPQQLPSQV 199
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 200 PEHSPVVYGTVESAHLAASTPVTAASDQK 228
>AL672037-2|CAI16194.1| 630|Homo sapiens eukaryotic translation
initiation factor 4 gamma,udogene 1 protein.
Length = 630
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 255 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 314
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 315 PEHSPVVYGTVESAHLAASTPVTAASDQK 343
>AL627311-3|CAI14554.1| 217|Homo sapiens eukaryotic translation
initiation factor 4 gamma,sporter, y+ system), member 3
protein.
Length = 217
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>AL627311-2|CAI14553.1| 1585|Homo sapiens eukaryotic translation
initiation factor 4 gamma,actor receptor 3 (achondroplas
protein.
Length = 1585
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>AL627311-1|CAI14552.1| 630|Homo sapiens eukaryotic translation
initiation factor 4 gamma,-Asp/His) box polypeptide 11 (
protein.
Length = 630
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 255 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 314
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 315 PEHSPVVYGTVESAHLAASTPVTAASDQK 343
>AL606477-7|CAI12534.1| 1585|Homo sapiens eukaryotic translation
initiation factor 4 gamma,1 protein.
Length = 1585
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>AL358392-3|CAI12156.1| 217|Homo sapiens eukaryotic translation
initiation factor 4 gamma,ubfamily, member 10 protein.
Length = 217
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>AL358392-2|CAI12155.1| 1585|Homo sapiens eukaryotic translation
initiation factor 4 gamma,fluid) protein.
Length = 1585
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>AL358392-1|CAI12154.1| 630|Homo sapiens eukaryotic translation
initiation factor 4 gamma,e protein.
Length = 630
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 255 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 314
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 315 PEHSPVVYGTVESAHLAASTPVTAASDQK 343
>AF012072-1|AAC02903.2| 1585|Homo sapiens eIF4GII protein.
Length = 1585
Score = 36.3 bits (80), Expect = 0.26
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 129 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQV 188
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 189 PEHSPVVYGTVESAHLAASTPVTAASDQK 217
>BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein.
Length = 1884
Score = 35.1 bits (77), Expect = 0.61
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 432 LYMACLLVCAAARMYDELMVYQYTPLVHNITGNLTTPT--------IPTFYHTWTH-FSI 482
L +CLLV + DEL+ PL+ NI G LT T I FYHTWTH F++
Sbjct: 1349 LLQSCLLVEPDLVIQDELV----KPLITNIIGILTICTKDVLDKELISAFYHTWTHLFNL 1404
Query: 483 WRAVLSVLGLV 493
+L G +
Sbjct: 1405 LAMLLRKAGAI 1415
>BC046222-1|AAH46222.2| 648|Homo sapiens RTTN protein protein.
Length = 648
Score = 35.1 bits (77), Expect = 0.61
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 432 LYMACLLVCAAARMYDELMVYQYTPLVHNITGNLTTPT--------IPTFYHTWTH-FSI 482
L +CLLV + DEL+ PL+ NI G LT T I FYHTWTH F++
Sbjct: 113 LLQSCLLVEPDLVIQDELV----KPLITNIIGILTICTKDVLDKELISAFYHTWTHLFNL 168
Query: 483 WRAVLSVLGLV 493
+L G +
Sbjct: 169 LAMLLRKAGAI 179
>AK126538-1|BAC86583.1| 1004|Homo sapiens protein ( Homo sapiens
cDNA FLJ44574 fis, clone UTERU3018081. ).
Length = 1004
Score = 35.1 bits (77), Expect = 0.61
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 432 LYMACLLVCAAARMYDELMVYQYTPLVHNITGNLTTPT--------IPTFYHTWTH-FSI 482
L +CLLV + DEL+ PL+ NI G LT T I FYHTWTH F++
Sbjct: 469 LLQSCLLVEPDLVIQDELV----KPLITNIIGILTICTKDVLDKELISAFYHTWTHLFNL 524
Query: 483 WRAVLSVLGLV 493
+L G +
Sbjct: 525 LAMLLRKAGAI 535
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 33.5 bits (73), Expect = 1.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 168 EKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKP-RKTKRKSRDERRDTNA 226
E +D L E +D L + E E +D+ N K ++ K +K KRK +DE D N
Sbjct: 69 EGSNDELSENEED----LEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Query: 227 NGRDVSPK 234
+G PK
Sbjct: 125 DGCLKEPK 132
>AL031847-13|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 33.5 bits (73), Expect = 1.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 168 EKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKP-RKTKRKSRDERRDTNA 226
E +D L E +D L + E E +D+ N K ++ K +K KRK +DE D N
Sbjct: 69 EGSNDELSENEED----LEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Query: 227 NGRDVSPK 234
+G PK
Sbjct: 125 DGCLKEPK 132
>AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens
cDNA FLJ45103 fis, clone BRAWH3032571, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 1225
Score = 33.5 bits (73), Expect = 1.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 168 EKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKP-RKTKRKSRDERRDTNA 226
E +D L E +D L + E E +D+ N K ++ K +K KRK +DE D N
Sbjct: 69 EGSNDELSENEED----LEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Query: 227 NGRDVSPK 234
+G PK
Sbjct: 125 DGCLKEPK 132
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 33.5 bits (73), Expect = 1.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 168 EKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKP-RKTKRKSRDERRDTNA 226
E +D L E +D L + E E +D+ N K ++ K +K KRK +DE D N
Sbjct: 69 EGSNDELSENEED----LEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Query: 227 NGRDVSPK 234
+G PK
Sbjct: 125 DGCLKEPK 132
>AY331186-1|AAQ97141.1| 1231|Homo sapiens NPF/calponin-like protein
protein.
Length = 1231
Score = 32.7 bits (71), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 241 KSKQGKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+S +GK++RP D+S L S E NPF P PN+
Sbjct: 338 QSTKGKNIRPVDMSKYLYADSSKTEEEELDESNPFYEPKSTPPPNN 383
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>BC048125-1|AAH48125.1| 304|Homo sapiens C15orf33 protein protein.
Length = 304
Score = 32.3 bits (70), Expect = 4.3
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 162 SSLSALEKVDDYLKEYNKDEVVTLSGELEIEHN 194
SS LE+ ++LK+Y+K + + LS E+E E N
Sbjct: 113 SSYRKLERYGEFLKKYHKKKKIMLSDEMETEKN 145
>AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif protein
39 protein.
Length = 193
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 32.3 bits (70), Expect = 4.3
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 195 DFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQGKSVRPTDLS 254
D E S++ + K +R+SR RD GR SP + + +GK P +
Sbjct: 60 DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119
Query: 255 AMLQTLESSIPYHEDYIDNPFSSPSPVTSPND 286
+ S P+ +D +P P +P +
Sbjct: 120 LSRRRSRSKSPFRKD--KSPVREPIDNLTPEE 149
>AK057362-1|BAB71451.1| 508|Homo sapiens protein ( Homo sapiens
cDNA FLJ32800 fis, clone TESTI2002544. ).
Length = 508
Score = 32.3 bits (70), Expect = 4.3
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 162 SSLSALEKVDDYLKEYNKDEVVTLSGELEIEHN 194
SS LE+ ++LK+Y+K + + LS E+E E N
Sbjct: 113 SSYRKLERYGEFLKKYHKKKKIMLSDEMETEKN 145
>AB209119-1|BAD92356.1| 1780|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 3 variant protein.
Length = 1780
Score = 32.3 bits (70), Expect = 4.3
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 RHKPRKTKRKSRDER-RDTNANGRDVSPKVFK-TGSKSKQGKSVRPTDLSAMLQTLESSI 264
+ +P KR+ + R RD N G+D++ ++ GS++ RPT Q L S +
Sbjct: 325 QQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQ-LPSQV 383
Query: 265 PYHEDYIDNPFSS-----PSPVTSPNDER 288
P H + S +PVT+ +D++
Sbjct: 384 PEHSPVVYGTVESAHLAASTPVTAASDQK 412
>AL158217-11|CAI22163.1| 854|Homo sapiens espin protein.
Length = 854
Score = 31.9 bits (69), Expect = 5.7
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 220 ERRDTNANGRDVSPKVFK-TGSKS------KQGKSVRPTDLSAMLQTLESSIPYHEDYID 272
+RR +++ G S + TG S K GKS++PT S L T+ S I D
Sbjct: 630 QRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGIGQPAFQPD 689
Query: 273 NPFSSPSPVTSP 284
+P S SP SP
Sbjct: 690 SPLPSVSPALSP 701
>AL031848-3|CAI19773.1| 854|Homo sapiens espin protein.
Length = 854
Score = 31.9 bits (69), Expect = 5.7
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 220 ERRDTNANGRDVSPKVFK-TGSKS------KQGKSVRPTDLSAMLQTLESSIPYHEDYID 272
+RR +++ G S + TG S K GKS++PT S L T+ S I D
Sbjct: 630 QRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGIGQPAFQPD 689
Query: 273 NPFSSPSPVTSP 284
+P S SP SP
Sbjct: 690 SPLPSVSPALSP 701
>U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 68 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 126
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 127 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 158
>U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 68 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 126
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 127 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 158
>M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein.
Length = 765
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 72 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 130
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 131 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 162
>BC067349-1|AAH67349.1| 165|Homo sapiens TOP1 protein protein.
Length = 165
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 72 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 130
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 131 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 162
>BC058001-1|AAH58001.1| 454|Homo sapiens ANKRD11 protein protein.
Length = 454
Score = 31.5 bits (68), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 203 SKDIRHKPRKTKRKSRDERRDTNA--NGRDVSPKVFKTGSKSKQGKS 247
S D +H R+ ++ RD R+D A GRD KVF+ + K +S
Sbjct: 160 SSDKQHPERQKDKEPRDRRKDRGAADAGRDKKEKVFEKHKEKKDKES 206
>AY533563-1|AAS45544.1| 2663|Homo sapiens ankyrin repeat-containing
cofactor-1 protein.
Length = 2663
Score = 31.5 bits (68), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 203 SKDIRHKPRKTKRKSRDERRDTNA--NGRDVSPKVFKTGSKSKQGKS 247
S D +H R+ ++ RD R+D A GRD KVF+ + K +S
Sbjct: 1167 SSDKQHPERQKDKEPRDRRKDRGAADAGRDKKEKVFEKHKEKKDKES 1213
>AY373756-1|AAR25661.1| 2664|Homo sapiens ankyrin repeat-containing
protein protein.
Length = 2664
Score = 31.5 bits (68), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 203 SKDIRHKPRKTKRKSRDERRDTNA--NGRDVSPKVFKTGSKSKQGKS 247
S D +H R+ ++ RD R+D A GRD KVF+ + K +S
Sbjct: 1168 SSDKQHPERQKDKEPRDRRKDRGAADAGRDKKEKVFEKHKEKKDKES 1214
>AL158217-1|CAI22151.1| 187|Homo sapiens espin protein.
Length = 187
Score = 31.5 bits (68), Expect = 7.5
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 243 KQGKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSP 284
K GKS++PT S L T+ S I D+P S SP SP
Sbjct: 3 KAGKSLKPTPQSKGLTTVFSGIGQPAFQPDSPLPSVSPALSP 44
>AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 72 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 130
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 131 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 162
>AL031848-1|CAI19771.1| 187|Homo sapiens espin protein.
Length = 187
Score = 31.5 bits (68), Expect = 7.5
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 243 KQGKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSP 284
K GKS++PT S L T+ S I D+P S SP SP
Sbjct: 3 KAGKSLKPTPQSKGLTTVFSGIGQPAFQPDSPLPSVSPALSP 44
>AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 31.5 bits (68), Expect = 7.5
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 72 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 130
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 131 EDIKPLKRPRDEDDADYKPKKIKTEDTKKEKK 162
>BC004475-1|AAH04475.1| 164|Homo sapiens TOP1 protein protein.
Length = 164
Score = 31.1 bits (67), Expect = 9.9
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 161 GSSLSALEKVDDYLKEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPR------KTK 214
GSS +K D KE K+E V SG+ +I+ + EN + I+ +P K
Sbjct: 72 GSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK-KEKENGFSSPPQIKDEPEDDGYFVPPK 130
Query: 215 RKSRDERRDTNANGRDVSPKVFKTGSKSKQGK 246
+ +R + + D PK KT K+ K
Sbjct: 131 EDIKPLKRPRDEDDADYKPKKIKTEDTKKKKK 162
>AK001588-1|BAA91774.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ10726 fis, clone NT2RP3001216, weakly similar to
CYLICIN I. ).
Length = 148
Score = 31.1 bits (67), Expect = 9.9
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 175 KEYNKDEVVTLSGELEIEHNDFENNNGTSKDIRHKPRKTKRKSRDERRDTNANGRDVSPK 234
K+ K + L E H+D ++ + + +KTKRK R+++ T+ ++ +
Sbjct: 67 KKSLKKPALFLEAESNTSHSDDSASSSSEESEERDTKKTKRKKREKKAHTSVTNNEIQER 126
Query: 235 VFK 237
K
Sbjct: 127 TNK 129
>AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein.
Length = 1163
Score = 31.1 bits (67), Expect = 9.9
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 187 GELEIEHNDFENNNGTSKDIRHKPR-KTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQ- 244
G L+IE + + RHK K RK ++ ++ K +K+ SKS Q
Sbjct: 580 GGLKIESETPVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKSTSKSSQK 639
Query: 245 GKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSPNDERLDRFGARR 296
+ + TD S+ S+P P S+ +PV + E D F +R
Sbjct: 640 SREIIETDTSSSDSDESESLPPSSQTPKYPESNRTPVKPSSVEEEDSFFRQR 691
>AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein.
Length = 1163
Score = 31.1 bits (67), Expect = 9.9
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 187 GELEIEHNDFENNNGTSKDIRHKPR-KTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQ- 244
G L+IE + + RHK K RK ++ ++ K +K+ SKS Q
Sbjct: 580 GGLKIESETPVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKSTSKSSQK 639
Query: 245 GKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSPNDERLDRFGARR 296
+ + TD S+ S+P P S+ +PV + E D F +R
Sbjct: 640 SREIIETDTSSSDSDESESLPPSSQTPKYPESNRTPVKPSSVEEEDSFFRQR 691
>AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q31
variant protein.
Length = 907
Score = 31.1 bits (67), Expect = 9.9
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 187 GELEIEHNDFENNNGTSKDIRHKPR-KTKRKSRDERRDTNANGRDVSPKVFKTGSKSKQ- 244
G L+IE + + RHK K RK ++ ++ K +K+ SKS Q
Sbjct: 587 GGLKIESETPVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKSTSKSSQK 646
Query: 245 GKSVRPTDLSAMLQTLESSIPYHEDYIDNPFSSPSPVTSPNDERLDRFGARR 296
+ + TD S+ S+P P S+ +PV + E D F +R
Sbjct: 647 SREIIETDTSSSDSDESESLPPSSQTPKYPESNRTPVKPSSVEEEDSFFRQR 698
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,106,205
Number of Sequences: 224733
Number of extensions: 2810127
Number of successful extensions: 10419
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10366
Number of HSP's gapped (non-prelim): 72
length of query: 522
length of database: 73,234,838
effective HSP length: 93
effective length of query: 429
effective length of database: 52,334,669
effective search space: 22451573001
effective search space used: 22451573001
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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