GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001296-TA|BGIBMGA001296-PA|IPR000418|Ets,
IPR003118|Sterile alpha motif/pointed, IPR010993|Sterile alpha motif
homology
         (469 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    44   2e-06
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    44   2e-06
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    28   0.16 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    27   0.28 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   2.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   4.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   4.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   4.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   8.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   8.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   8.0  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 258 DPMLWSTADVKAWVMFTLQHFNQPLVPSEYFNMDGAALVALTEEEFNQRAPQSGSTLYAQ 317
           DP  W+   V  W+    Q    P VPS  F M+G AL  ++   F  R P  G  LY  
Sbjct: 35  DPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGGKLLYKD 94

Query: 318 LEI 320
            ++
Sbjct: 95  FQL 97


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 258 DPMLWSTADVKAWVMFTLQHFNQPLVPSEYFNMDGAALVALTEEEFNQRAPQSGSTLYAQ 317
           DP  W+   V  W+    Q    P VPS  F M+G AL  ++   F  R P  G  LY  
Sbjct: 35  DPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGGKLLYKD 94

Query: 318 LEI 320
            ++
Sbjct: 95  FQL 97


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 42  PESMLHSPPN-LHTKPPPPYPEDNNFLDRLYDFEGYP--TPSPSSDEGSIPTVALQPSSP 98
           P +ML +  N L  K PPP   D       + ++  P   PSPSS   S+PT     S+P
Sbjct: 36  PLAMLAAQCNKLSNKSPPPLA-DAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTSNP 94

Query: 99  -YSS 101
            YSS
Sbjct: 95  TYSS 98


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 76  YPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKE 112
           Y  P PS+D+   P++ ++ S+ YS L  + P  +K+
Sbjct: 10  YGAPYPSTDQNPYPSIGVESSAFYSPL--SNPYALKD 44


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 144 PSPTPQPEEYIDIEQLLKENQILQDSTQHSYITPKT 179
           P+P PQP +  + E      Q  + ST     T KT
Sbjct: 397 PTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKT 432


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 5   VPRSGCSPPSASQGERAVPTSPADLQHL-LRLLGASS 40
           V  S CSP S  Q  R  P S   LQ L LRL  A+S
Sbjct: 145 VKSSVCSPGSGHQDSRTSP-SGQHLQELGLRLEDANS 180


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 5   VPRSGCSPPSASQGERAVPTSPADLQHL-LRLLGASS 40
           V  S CSP S  Q  R  P S   LQ L LRL  A+S
Sbjct: 145 VKSSVCSPGSGHQDSRTSP-SGQHLQELGLRLEDANS 180


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 87  SIPTVALQPSSPYSSLHY 104
           S+PTVAL+ +   SSL Y
Sbjct: 477 SLPTVALEVAGNISSLRY 494


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 5   VPRSGCSPPSASQGERAVPTSPADLQHL-LRLLGASS 40
           V  S CSP S  Q  R  P S   LQ L LRL  A+S
Sbjct: 145 VKSSVCSPGSGHQDSRTSP-SGQHLQELGLRLEDANS 180


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 126 YPLSPSGSCVSYGSHNQYPSPTPQPEEYI 154
           YP+  +      GS N+   P PQP E +
Sbjct: 372 YPILKAIHQTLGGSSNEIVEPVPQPVEEV 400


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 2   PQTVPRSGC-------SPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHT 54
           P  +P  GC       S PS ++   A+P    D+ H   +   ++PP       P+   
Sbjct: 47  PAALPIEGCNETGFINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAGYPMDVPHGMG 106

Query: 55  KPPPPYPE 62
            P    PE
Sbjct: 107 SPGVNVPE 114


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 2   PQTVPRSGC-------SPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHT 54
           P  +P  GC       S PS ++   A+P    D+ H   +   ++PP       P+   
Sbjct: 47  PAALPIEGCNETGFINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAGYPMDVPHGMG 106

Query: 55  KPPPPYPE 62
            P    PE
Sbjct: 107 SPGVNVPE 114


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,907
Number of Sequences: 317
Number of extensions: 6564
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 12
length of query: 469
length of database: 114,650
effective HSP length: 59
effective length of query: 410
effective length of database: 95,947
effective search space: 39338270
effective search space used: 39338270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)