Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001296-TA|BGIBMGA001296-PA|IPR000418|Ets,
IPR003118|Sterile alpha motif/pointed, IPR010993|Sterile alpha motif
homology
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 36 0.016
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 32 0.20
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.35
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 30 0.80
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 30 0.80
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 30 0.80
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.80
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 1.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 1.4
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 2.4
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 28 3.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 28 3.2
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 3.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 3.2
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 5.6
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 5.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 7.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 7.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 7.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 7.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 9.8
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 35.5 bits (78), Expect = 0.016
Identities = 37/185 (20%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 2 PQTVP--RSGCSPPSASQGER----AVPTSPADLQHLLRLLGASSPPESMLHSP-----P 50
P + P + SP + Q R +V +PA + + S + L P P
Sbjct: 42 PPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKPVVSSKP 101
Query: 51 NLHTKPPPPYPEDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYI 110
N T PPP + + + +P+P++ +P+ ++ PS+ S + +T
Sbjct: 102 NQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSRAN-STATTT 160
Query: 111 KEEPNRLSVPGFASPYPL----SPSGSCVSYGSHNQYPSPTPQPEEYIDIEQLLKENQIL 166
+ +S P A+ + L SP+ S S G + TP ++++ +N +
Sbjct: 161 PHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVS 220
Query: 167 QDSTQ 171
+ +++
Sbjct: 221 RQNSR 225
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.9 bits (69), Expect = 0.20
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 69 RLYDFEGYPTPSPS------SDEGSIPTVALQPSSP-YSSLHYTTPVYIKEEPNRLSVPG 121
RL+ F+ +P P+ S+ S+P++ S+P SS+ +TT + P+ L
Sbjct: 94 RLWSFKNFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSD 153
Query: 122 FA----SPYPLSPSGSCVSYGSHNQYPSPTPQP 150
+P L+P S ++ ++ P+P P P
Sbjct: 154 HPIDLDNPEHLTPPSSFITAKQLSRLPTPLPPP 186
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.1 bits (67), Expect = 0.35
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 12 PPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFLDRLY 71
PP A + + A P D R + PP L PPPP P +
Sbjct: 195 PPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP---TLPPQST 251
Query: 72 DFEGYPTPSPS-SDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPGFASPYPLSP 130
+ P PS + ++ GS + P++P T + S+ + P SP
Sbjct: 252 NTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSM-AHSYDSPPSP 310
Query: 131 SGSCVSYGSHNQY 143
S +YG NQ+
Sbjct: 311 SSPSDAYGDPNQH 323
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.80
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 67 LDRLYDFEGYPTPSPSSDEGSIPTVALQPSS 97
+++ YD PTP+ ++ S+P +A P+S
Sbjct: 588 MEKQYDLHRLPTPTSQTESASVPQIANPPNS 618
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.9 bits (64), Expect = 0.80
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 56 PPPPYPEDNNF-LDRLYDFEGYPTPS----PSSDEGSIPTVA--LQPSSPYSSLHYTTPV 108
P PP P + N L+ +P+ P + S+P + P + ++ V
Sbjct: 112 PTPPNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKV 171
Query: 109 YIKE-EPNRLSVPGFASPYPLSPSGSCVSYGS--HNQYPSPTPQPEEYIDIEQLLKENQI 165
Y + S P + + Y ++ S + GS +N +P TP P +
Sbjct: 172 YANQLSQQNTSNPTYHNAYDMA---SMMKNGSRMNNSFPPTTPYPPA---------NDTT 219
Query: 166 LQDSTQHSYITPKTEIEEPRDHILLRSVLEDTTFQKR-FNLRPVPLELGNVKMEESSG 222
+ S HS+ +P + E+P + R+ DTT F+ R +P NV M++ G
Sbjct: 220 VNSSLPHSFASPSSTFEQPHT-VQSRAPSVDTTSSSHSFSARNIP---ANVSMQQQMG 273
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.9 bits (64), Expect = 0.80
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 25/170 (14%)
Query: 18 GERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFLDRLYDFEGYP 77
G R TS H L S P S HS P + +P P P L+D
Sbjct: 62 GPRKQTTSSPSFSHAAPLHPLSPP--SFTHSQPQIQAQPVPRRPS-------LFDRPNLV 112
Query: 78 TPSPS--SDEGSIPTVALQPSSPYSSLHYT--TPVYIKEEP--NRLSVPGFASPYPLSPS 131
+ S S D S+ VA Q ++P +H+T +P ++ P S S + S S
Sbjct: 113 SRSSSRLGDSPSLSPVA-QVANP---IHHTAPSPSDVRAFPIHKNASTGVKRSFFSSSMS 168
Query: 132 GSCVSYGSHNQYPSPTPQPEEYI----DIEQLLKENQILQDSTQHSYITP 177
+S SH+ PSP Q ++I ++L K+N +S+I+P
Sbjct: 169 NGAMSPPSHS--PSPFLQSSQHIPPSTPAQKLRKKNNFDSFRISNSHISP 216
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 123 ASPYPLSPSGSCVSYGSHNQY-PSPTPQPEEYIDIEQLLKENQI 165
A P P P VS G Y P+P +PE ID L +E +I
Sbjct: 773 AGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLTEEQKI 816
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 74 EGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPGFASPYPLSPSGS 133
E P S +I +L+P S Y H +T ++ EP+ L+V SP+P P+
Sbjct: 191 ENNPRVSNEPPRVTIENASLKPFSGYIKSHMSTSNFLNGEPD-LNVNVDLSPFPNLPATV 249
Query: 134 CVSYGSH--NQYPSPTPQ 149
++ + N + P+ Q
Sbjct: 250 PITQAASTANAFQQPSNQ 267
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 38 ASSPPESMLHSPPNLHTKPPPPYP---EDNNF--LDRLYDFEGYPTPSPSS 83
+SS ES L S + H PPP P D +F + + Y+ EG TP P S
Sbjct: 29 SSSFHESSLTSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVS 79
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 1.4
Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 14/194 (7%)
Query: 14 SASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFLDRLYDF 73
SA RA + L+HL ++ + + P L + P P F
Sbjct: 245 SAPSPPRATNVAVPCLKHLESSEQGNNLLINKAFTSPRLPSPPQSTRPSSTRFPSVPLSD 304
Query: 74 EGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPGFASPYPLSPSGS 133
E S ++E P+V L SP S LH +P +I S+ P LS +
Sbjct: 305 EKNSIVSVKNEE---PSVILGNQSPISDLHPYSPSWIPYPKELQSLQVNRIP-ELSLENN 360
Query: 134 CVSYGSHNQYPSPTPQPEEYIDIEQLLKENQILQDSTQHSYITPKTEIEEPRDHILLRSV 193
+S + P P+P +L + + D T H + T I P + SV
Sbjct: 361 VMSTRDYKDI-MPHPRP------SAVLLDKPVSLDQTSHPFPHQNTYILPPG---IRNSV 410
Query: 194 LEDTTFQKRFNLRP 207
D TF R +L P
Sbjct: 411 DYDGTFLSRKSLPP 424
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 2 PQTVPRSGCSP-PSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPP--NLHTKPPP 58
P P P P+ S G VP A + + A P+ + PP T PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 59 PYPEDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSSPYSS 101
P P + + P P+PSS+ S+ T SP+S+
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSN 1262
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 77 PTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPGFASPYPLSPSGSCVS 136
P P S + P + P SS P+ + P + VP A P P+ S V
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPP-IPVPSTAPPVPIPTSTPPVP 1053
Query: 137 YGSHNQYPSPTPQPEEYIDIEQL 159
S +P P P +I +
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIPSI 1076
Score = 26.2 bits (55), Expect = 9.8
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 12 PPSASQGERAVPTSPA-DLQHL--LRLLGASSPPESM--LHSPPNL--HTKPPPPYPEDN 64
PPSA + V TSPA L + + L + +PP + +PP T PP P P
Sbjct: 991 PPSAPLS-KPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTST 1049
Query: 65 NFLDRLYDFEGY---PTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPG 121
+ + P P+PSS+ SIP + P P S P P + P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP-PVPKPS 1108
Query: 122 FASPYPLSPSGS 133
A P +PSG+
Sbjct: 1109 VAVPPVPAPSGA 1120
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 30 QHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFL---DRLYDFEGYPTPSPSSDEG 86
Q +L LL + P+S + PP + PP N+ L + +D Y P +
Sbjct: 296 QKILHLLNEGNEPKSPIQLPPVSNLPLNPPIQSSNSRLSHDNNSFDPFAYLGLDPKNPSA 355
Query: 87 SIPTVALQ----PSSPYSSLHYTTPVY 109
S P V Q + P + H+ +Y
Sbjct: 356 SFPRVVSQNNMLTNKPVLNNHFQQSMY 382
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 23 PTSPADLQHLLRLLGASSPPESMLHSPP 50
P P +H G SPP +LHSPP
Sbjct: 211 PMEPPKFRHKKVPRGPPSPPPPVLHSPP 238
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 58 PPYPEDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRL 117
P + N +++ Y++ G + P+ + +PY +++ + + EP
Sbjct: 84 PSFTSSANSINQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSETEPKMP 143
Query: 118 SV---PGFASPYPLSPSGSCVSYGSHNQYPSP 146
S + PLS S +S NQ P+P
Sbjct: 144 SYMDDEEASDSLPLSLSSQSLSSQVTNQKPAP 175
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 62 EDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPG 121
E N +D D Y P+P+ D+G P A++ SS + +P K + N+L V
Sbjct: 52 EATNHIDEKGDILDYRPPTPTQDKGVGPFYAIRDFP--SSSSFQSPFCEKCQMNQLIVNR 109
Query: 122 FASPY 126
+ Y
Sbjct: 110 MLADY 114
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.9 bits (59), Expect = 3.2
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 4 TVPRSGCSPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPED 63
+VPR PP +G+ +P P + A P + +P T P PP +
Sbjct: 250 SVPRLPHDPPDL-EGDDNIPDLPKRPASI-----APQPTGASTIAPQPTGTSPSPPV--E 301
Query: 64 NNFLDRLYDFEGYPTPSPSSDEGSIPTVALQ 94
NF D Y P P D S PT+ Q
Sbjct: 302 MNFPDTSDITPAYSEPEPIQDFWSDPTLDQQ 332
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 149 QPEEYIDIEQLLKENQILQDSTQHS 173
+PE+ I++++LL+EN +L + H+
Sbjct: 23 KPEDEINLKELLEENGVLDECKSHN 47
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 5.6
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 150 PEEYIDIEQLLKENQILQDSTQHSYITPKTEIEEP 184
P + +D + L+ ++++ + ++TP+TE P
Sbjct: 629 PVDLVDFDYLITKDKLEEGENYKDFLTPQTEFHSP 663
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 132 GSCVSYGSH--NQYPSPTPQPEEYIDIEQLLKENQILQ 167
G+ +SY H + + PE Y+ +E+LL+ ++ILQ
Sbjct: 1340 GTNISYNYHVLKDWCLESGVPEAYLQLEELLQTSKILQ 1377
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 7.4
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 4 TVPRSGCSPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPED 63
+ P SG PPS S A P +PA +++P + S + P PYP
Sbjct: 56 SAPPSG-PPPSYSNS--AAPATPA------ASASSAAPAPAPAASQNRAYGAAPQPYPPQ 106
Query: 64 NNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSS 97
+ + Y + P P+ + P A QP++
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYA-QPAT 139
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 45 MLHSPPNLHTKPPPPYPEDNNFLDRLYDFEGYPTPSPSSD 84
+L S PN + PP + + +L+ D P PS SSD
Sbjct: 220 LLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSD 259
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 7.4
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 7/132 (5%)
Query: 2 PQTVPRSGCSPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYP 61
PQ+ P +P S ++ S +L+ A P + PP P P P
Sbjct: 447 PQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLP 506
Query: 62 EDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVPG 121
+ G P + S P +AL P P Y + P + PG
Sbjct: 507 P-------IPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559
Query: 122 FASPYPLSPSGS 133
Y S S +
Sbjct: 560 APGSYNTSESSN 571
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 9.8
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 27 ADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFLDRLYDFEGYPTPSPSSDEG 86
+ L H L+ SP S + + T P YP + R ++ +P S +G
Sbjct: 192 SSLSHELQT-SQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQFN-ASQDSPKRSPSKG 249
Query: 87 SIPTVALQPSSPYSSLHYTTPVYIKEEPNRLSVP 120
S ++ +PS YS +T ++ + N P
Sbjct: 250 SWSSILRRPSLTYSPKRQSTGLHRRSLTNYFKFP 283
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,678
Number of Sequences: 5004
Number of extensions: 120396
Number of successful extensions: 306
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 30
length of query: 469
length of database: 2,362,478
effective HSP length: 75
effective length of query: 394
effective length of database: 1,987,178
effective search space: 782948132
effective search space used: 782948132
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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