Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
(161 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818 29 1.3
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 1.8
01_06_1647 - 38894007-38894183,38894267-38894344,38894715-388947... 29 1.8
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 29 1.8
05_02_0123 + 6842791-6843077,6843204-6843225 28 3.1
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 28 4.1
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 27 5.4
>06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818
Length = 299
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 2 PKLPWRSHMHGVFRAEVGDNHLGRCNITSHLSVHGQL 38
P LPW + +HG F + D + R + + S HG +
Sbjct: 12 PPLPWLTLLHGTF-LSISDGKIHRMPLPNDASCHGSI 47
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 31 HLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTRE 81
HLS GQ+R L TH SL+S R G ++++C+ H + +
Sbjct: 2032 HLSEAGQIRWHPVGRTYLWSETHSLSSLLSHESRVGFMKSSVCYPSHPSND 2082
>01_06_1647 -
38894007-38894183,38894267-38894344,38894715-38894728,
38894892-38895000,38895267-38895373,38895534-38895592,
38895677-38895744,38895867-38895929
Length = 224
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1 MPKLPWRSHMHGVFRAEVGDN-HLGRCNITS-HLSVHGQLRAAARALHILGI 50
+PKL +R HG F+A + H+ CN + HG L ++AR+ +L +
Sbjct: 7 LPKLRFRPKCHGHFQAIYPVHVHIKNCNACKCQIPTHGLLVSSARSRPVLPV 58
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 20 DNHLGRCNITSHLSVHGQLRAAARALHILGILTHK 54
D H +I SH S+H + ++R LH+L I+ K
Sbjct: 671 DPHCASIDIPSH-SIHNMSKVSSRKLHLLNIVCRK 704
>05_02_0123 + 6842791-6843077,6843204-6843225
Length = 102
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 37 QLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQDG 85
QL AAA + + +LT K + + GRRR T R +DG
Sbjct: 21 QLPAAAGVVRVKVVLTRKQAARLVSLAGEGRRRRTAAQLVRELRRMEDG 69
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 55 TPSLVSRAHRSGRRRTTLCHCEHGTREQQDGRHALCSPMH 94
T SL + ++ RR + C RE++D HALC H
Sbjct: 408 TNSLATLQNKKTRRLEPMAICSICGREEEDVAHALCRCPH 447
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 PWRSHMHGVFRAEVGD-NHLGRCNITSHLSVHGQLRAAAR 43
PW + HG+FR VGD H R H + G AA R
Sbjct: 434 PWYAADHGMFRFCVGDTEHDWRPGTAQHAFLDGCFAAADR 473
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.136 0.453
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,771,840
Number of Sequences: 37544
Number of extensions: 168874
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 7
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)
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