GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    24   9.5  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    24   9.5  

>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 39  RAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCE 76
           +A +  LH  G LT KT  +V R  R G   +TL H E
Sbjct: 272 QAYSLRLHWYGKLTPKTDIIVERMVRQG---STLSHSE 306


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 4   LPWRSHMHGVFRAEVGDNHLGRCNITSHL 32
           +PW +  + +   ++G N + + N  SHL
Sbjct: 225 IPWNNASYCLITIDLGGNSIVKMNCNSHL 253


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.136    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,566
Number of Sequences: 5004
Number of extensions: 17393
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 2
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)