GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818           29   1.3  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    29   1.8  
01_06_1647 - 38894007-38894183,38894267-38894344,38894715-388947...    29   1.8  
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    29   1.8  
05_02_0123 + 6842791-6843077,6843204-6843225                           28   3.1  
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    28   4.1  
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829...    27   5.4  

>06_01_0348 + 2518722-2519108,2519216-2519329,2519420-2519818
          Length = 299

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2  PKLPWRSHMHGVFRAEVGDNHLGRCNITSHLSVHGQL 38
          P LPW + +HG F   + D  + R  + +  S HG +
Sbjct: 12 PPLPWLTLLHGTF-LSISDGKIHRMPLPNDASCHGSI 47


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 31   HLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTRE 81
            HLS  GQ+R        L   TH   SL+S   R G  ++++C+  H + +
Sbjct: 2032 HLSEAGQIRWHPVGRTYLWSETHSLSSLLSHESRVGFMKSSVCYPSHPSND 2082


>01_06_1647 -
          38894007-38894183,38894267-38894344,38894715-38894728,
          38894892-38895000,38895267-38895373,38895534-38895592,
          38895677-38895744,38895867-38895929
          Length = 224

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 1  MPKLPWRSHMHGVFRAEVGDN-HLGRCNITS-HLSVHGQLRAAARALHILGI 50
          +PKL +R   HG F+A    + H+  CN     +  HG L ++AR+  +L +
Sbjct: 7  LPKLRFRPKCHGHFQAIYPVHVHIKNCNACKCQIPTHGLLVSSARSRPVLPV 58


>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 20  DNHLGRCNITSHLSVHGQLRAAARALHILGILTHK 54
           D H    +I SH S+H   + ++R LH+L I+  K
Sbjct: 671 DPHCASIDIPSH-SIHNMSKVSSRKLHLLNIVCRK 704


>05_02_0123 + 6842791-6843077,6843204-6843225
          Length = 102

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 37 QLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQDG 85
          QL AAA  + +  +LT K  + +      GRRR T        R  +DG
Sbjct: 21 QLPAAAGVVRVKVVLTRKQAARLVSLAGEGRRRRTAAQLVRELRRMEDG 69


>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 55  TPSLVSRAHRSGRRRTTLCHCEHGTREQQDGRHALCSPMH 94
           T SL +  ++  RR   +  C    RE++D  HALC   H
Sbjct: 408 TNSLATLQNKKTRRLEPMAICSICGREEEDVAHALCRCPH 447


>09_04_0659 +
           19282366-19282584,19282668-19282759,19282868-19282958,
           19283393-19283512,19283638-19283730,19283795-19283933,
           19284060-19284141,19284229-19284361,19285024-19286010
          Length = 651

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5   PWRSHMHGVFRAEVGD-NHLGRCNITSHLSVHGQLRAAAR 43
           PW +  HG+FR  VGD  H  R     H  + G   AA R
Sbjct: 434 PWYAADHGMFRFCVGDTEHDWRPGTAQHAFLDGCFAAADR 473


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.136    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,771,840
Number of Sequences: 37544
Number of extensions: 168874
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 7
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)