GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
         (161 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_17786| Best HMM Match : MSSP (HMM E-Value=1.8)                      27   9.8  
SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)                     27   9.8  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1307

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 26  CNITSHLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQD 84
           C   + L+ H +LRA      ++G + H  P     A   GR      HCE    + ++
Sbjct: 367 CQFDAQLNTHSELRA------LMGDVEHGKPLEARDAFFGGRTNAIRLHCEANVEQGEE 419


>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 25  RCNITSHLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQD 84
           +C   + L+ H +LRA      ++G + H  P     A   GR      HCE    + ++
Sbjct: 399 KCQFDAQLNTHPELRA------LVGDVEHGKPLEARDAFLGGRTNAIRLHCEANVEQGEE 452


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 29  TSHLSVHGQLRAAARALHILGILTHKTPSL---VSRAHRSGRRRTTLCHCEHGTREQQDG 85
           T  L++H Q   +AR L+ L    H T +L      AH S R   TL    H TR  +  
Sbjct: 148 TRTLNMHTQHAHSARTLNTLTQHAHSTCTLNMHTQHAH-SARTLNTLTQHAHSTRTLRHA 206

Query: 86  RHALCS 91
            H+ C+
Sbjct: 207 -HSTCT 211


>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 19  GDNHLG--RCNITSHLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCE 76
           G N+ G   C   + L+ H +LRA      ++G + H  P     A   GR      HCE
Sbjct: 787 GYNYEGVWECQFDAQLNTHPELRA------LVGDVEHGKPLEARDAFFGGRTNAIRLHCE 840

Query: 77  HGTREQQDGRHALCSPMH 94
               + ++  +   +P++
Sbjct: 841 ADVEQGEEIHYYDFTPLY 858


>SB_17786| Best HMM Match : MSSP (HMM E-Value=1.8)
          Length = 419

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 18  VGDNHLGRCNITSHLSVHGQLRAAARALHILGILTHK-TPSLVSRAHRSGRRRTTLCHCE 76
           +G +   R  IT  +  HG  R    AL I G  T + T +L    H S RR  TLC   
Sbjct: 282 IGGHGSARRTITICIGGHGTTRHTI-ALCIGGHGTARNTITLCIGGHGSARRTITLCIGG 340

Query: 77  HGT 79
           HG+
Sbjct: 341 HGS 343


>SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)
          Length = 569

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 17  EVG-DNHLGRCNITSHLSVHGQLRAAARAL 45
           +VG D ++GRC  T  + +HGQ   A R L
Sbjct: 269 QVGKDEYMGRCVATPEVKLHGQGPPAPRLL 298


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 26  CNITSHLSVHGQLRAAARALHILGILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQDG 85
           C   + L+ H +LRA      ++G + H  P     A   GR      HCE    + ++ 
Sbjct: 768 CQFDAQLNTHPELRA------LVGDVEHGKPLEARDAFFGGRTNAIRLHCEANVEQCKEI 821

Query: 86  RHALCSPMHW 95
            +   S   W
Sbjct: 822 HYDFTSLYPW 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.136    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,965,920
Number of Sequences: 59808
Number of extensions: 164057
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 17
length of query: 161
length of database: 16,821,457
effective HSP length: 77
effective length of query: 84
effective length of database: 12,216,241
effective search space: 1026164244
effective search space used: 1026164244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)