GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
         (161 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   2.0  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   2.7  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 56   PSLVSRAHRSGRRRTTLCHCEHGTREQQDGRHALCSP 92
            P +    H     RT+L    + + EQ+  RH   SP
Sbjct: 1094 PRVADNQHNQDNDRTSLYSARNTSEEQRGRRHPTPSP 1130


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 50  ILTHKTPSLVSRAHRSGRRRTTLCHCEHGTREQQDGRHAL 89
           +L  + P L +R   +GR    L     G  ++QDG H L
Sbjct: 586 LLKREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLL 625


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.136    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,305
Number of Sequences: 2123
Number of extensions: 5097
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 161
length of database: 516,269
effective HSP length: 59
effective length of query: 102
effective length of database: 391,012
effective search space: 39883224
effective search space used: 39883224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)