GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001295-TA|BGIBMGA001295-PA|undefined
         (161 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40370.1 68418.m04897 glutaredoxin, putative similar to gluta...    27   4.6  
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    27   6.0  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    27   6.0  

>At5g40370.1 68418.m04897 glutaredoxin, putative similar to
          glutaredoxin [Ricinus communis] SWISS-PROT:P55143
          Length = 111

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 18 VGDNHLGRCNITSHLSVHGQL 38
          +G NH+G C+ TS+L   G+L
Sbjct: 72 IGGNHIGGCDATSNLHKDGKL 92


>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 48   LGILTHKTPSLVSRAHRSGRRRTTLCHCEHG-TREQQDGRHALC 90
            +GI + KT    S        R +L HCE     EQ+D R  +C
Sbjct: 2720 IGITSGKTCQPSSSTQPEDENRNSLSHCEPSEVVEQRDSRDQVC 2763


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 48   LGILTHKTPSLVSRAHRSGRRRTTLCHCEHG-TREQQDGRHALC 90
            +GI + KT    S        R +L HCE     EQ+D R  +C
Sbjct: 2720 IGITSGKTCQPSSSTQPEDENRNSLSHCEPSEVVEQRDSRDQVC 2763


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.136    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,394
Number of Sequences: 28952
Number of extensions: 104332
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 3
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)