Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001294-TA|BGIBMGA001294-PA|undefined
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977... 39 0.014
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 31 2.7
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 30 4.8
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471... 30 6.3
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292... 30 6.3
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208... 30 6.3
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 29 8.4
>08_01_1083 +
11096520-11096664,11097543-11097592,11097682-11097754,
11099122-11099201,11099354-11099505,11100653-11100812,
11100886-11100933,11101118-11101198,11101517-11101597
Length = 289
Score = 38.7 bits (86), Expect = 0.014
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 169 QYSHAAALYDHAGNTERAASLYIKLKSWLKVEALLPKINSPSIHIQYAKAKEAEGRYHDA 228
+Y AA L+D N+ + A K+W + + KI + H++ EA Y +A
Sbjct: 28 KYEDAADLFDKGANSFKLA------KNWSRAAQVYIKI--ANCHLKGDSKHEAASAYVEA 79
Query: 229 LKSYLKAQDYEAAIRLNLDKLEDIDEAVHLVQETKSVQGAKMVANYFQNSDDSSSAIKFL 288
Y K EAA LN + +D + + + + + K + + D A +L
Sbjct: 80 ANCYKKFSPQEAAQALN----QAVDLFLEIGRLNMAARYCKDIGEIYHQEQDLEKASDYL 135
Query: 289 VMSL-CYDDAFQLARKNGKLQLYGEILIQTSQAR--SEDFKSLA 329
S +D Q ++ N Q EI Q Q + +E F+++A
Sbjct: 136 EKSADLFDSEGQSSQSNSIKQKVAEIAAQLEQYQKANEIFEAIA 179
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 187 ASLYIKLKSWLKVEALLPKINSPSIHIQYA-----KAKEAEGRYHDALKSYLKAQDYE 239
A LY+++ W E + KI + S + A K EA+G+ +AL SY +A D +
Sbjct: 589 ALLYLRMSQWRDAEVCVSKIRTISPYSALAWHVKGKLYEAKGQPKEALGSYFRALDLD 646
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.3 bits (65), Expect = 4.8
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 199 VEALLPKINSPSIHIQYAKAKEAEGRYHDALKSYLKAQDYEAAIRLNLDKLEDIDEAVHL 258
+EAL +++ I +AKAKE Y D + +Q + +R L + ID +
Sbjct: 1735 IEALCKLMSTIGEMIDHAKAKEHMDAYFDIMLKLSTSQQLSSRVRFML--RDSIDLRKNK 1792
Query: 259 VQETKSVQGAKMV 271
Q+ + V+G K +
Sbjct: 1793 WQQRRKVEGPKKI 1805
>04_04_1169 -
31446291-31446395,31446789-31446918,31447047-31447126,
31447396-31447474,31448178-31448315,31448386-31448522
Length = 222
Score = 29.9 bits (64), Expect = 6.3
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 154 VTLLKECAQLLEEEKQYSHAAALYDHAGNTERAASLYIKLKSWLKVEALLPKINSPSIHI 213
+ + E +LEE+ + A LY AASLY+KL+ + A ++ S +
Sbjct: 57 IKMYDEACSILEEDGKEQMAFDLY------RAAASLYVKLEKYSDAAATFLRLGSAADKC 110
Query: 214 QYAKAKEAEGRYHDALKSYLKAQDYEAA 241
A + +G Y A+ YL A D++ A
Sbjct: 111 N-AINSQCKG-YLSAIIIYLYAHDFQQA 136
>03_03_0184 +
15228045-15228405,15228725-15228883,15228984-15229258,
15229346-15229594,15229670-15229788,15229874-15229972,
15230068-15230176,15230281-15230421
Length = 503
Score = 29.9 bits (64), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 170 YSHAAALYDHAGNTERAASLYIKLKSWLK 198
YS+ + YD+ G+T AA Y L +WL+
Sbjct: 190 YSNTTSDYDNTGDTSTAADAYTFLTNWLE 218
>03_01_0269 +
2080338-2080508,2081086-2081335,2081432-2082648,
2082933-2083083,2083247-2083563
Length = 701
Score = 29.9 bits (64), Expect = 6.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 189 LYIKLKSWLKVEALLPKINSPSIHIQYA-----KAKEAEGRYHDALKSYLKAQDYE 239
LYI++ W E + KI + S + A K EA+G +AL++Y A D E
Sbjct: 565 LYIRMSQWRDAELSISKIKAISPYSALAFHATGKLHEAKGFLKEALRAYSTALDLE 620
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 29.5 bits (63), Expect = 8.4
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 239 EAAIRLNLDKLEDIDEAVHLVQETKSVQGAKMVANYFQNSDDSSSAIKFLVMSLCYDD 296
++A++ LD+L D+ V + + +G+ ++ NY +S S+A L +S C+ +
Sbjct: 58 DSAVQKWLDQLRDVMYDVDDIIDLARFKGSVLLPNYPMSSSRKSTACSGLSLSSCFSN 115
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,165
Number of Sequences: 37544
Number of extensions: 492002
Number of successful extensions: 1286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 9
length of query: 622
length of database: 14,793,348
effective HSP length: 86
effective length of query: 536
effective length of database: 11,564,564
effective search space: 6198606304
effective search space used: 6198606304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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