Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001293-TA|BGIBMGA001293-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 43 2e-04
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 40 0.001
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 38 0.006
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 33 0.12
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 33 0.12
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 32 0.28
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 31 0.50
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 31 0.65
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 29 1.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 2.0
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 2.6
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 29 2.6
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom... 28 3.5
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 28 3.5
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 28 3.5
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 28 4.6
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 8.1
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 8.1
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 8.1
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 17 SNAVLLWECHANKRLNI-ETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPI 75
++++ LW + K + + + G + + W + LAVGT G + +++ +TK +
Sbjct: 144 ASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQLAVGTDSGVIYIWDIESTKSVRS 203
Query: 76 IGKHSKKICCAVWNKDNILILASEDKTL 103
+ HS+++ WN DN L +D+ +
Sbjct: 204 LKGHSERVAALAWN-DNTLTSGGKDEVI 230
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 3 WDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNL 62
W G LA+ T +S + +W+ + K + G E + LAW + L G G
Sbjct: 174 WTGKGTQLAVGT-DSGVIYIWDIESTKSVRSLKGHSERVAALAW--NDNTLTSG---GKD 227
Query: 63 ALYNHHTTKR----IPIIGKHSKKICCAVWNK 90
+ HH + ++ H ++IC W++
Sbjct: 228 EVILHHDLRAPGCCAEMMKVHEQEICGLQWDR 259
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHA-NKRLNIETGLREPPSCLAWAYEEPLLAVGTHK 59
+ + +DG +LAI N V +W N R + + SC+AW+ L VG
Sbjct: 207 LAYSSDGGFLAIARVNG-FVEIWNRKTKNNRCDYKFHHDGDISCMAWSPINWTLLVGGST 265
Query: 60 GNLALYNHHTT--KRIPIIGK-HSKKICCAVWNKD 91
GN+ +Y + +R+ I K H +++C WN D
Sbjct: 266 GNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEWNYD 300
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 44 LAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASED 100
L W LAVGTH G++ +++ T K+ + H++++ WN D++L D
Sbjct: 297 LRWVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWN-DHVLSSGGRD 352
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 22 LWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRI-PIIGKHS 80
LW+C + G SC+AWA + ++A G+ + ++ I + +H+
Sbjct: 161 LWDCDTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDALRRHT 220
Query: 81 KKICCAVWNKDNILILASEDKTLSINNSDGDTLRIISLR 119
K I W + + L + S +T+RI +++
Sbjct: 221 KPIMALCWQP--LHLAPDSGPYLLASGSKDNTVRIWNVK 257
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 52 LLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTLSI-NNSDG 110
LLA G+ + ++N + + H+ I C W N + +S DKT+ I + DG
Sbjct: 241 LLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
Query: 111 DTLRII 116
L I+
Sbjct: 301 KCLHIL 306
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 46 WAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTLSI 105
W+++ L+VG G + +Y+ + ++ + H ++ C WN+ +L+S ++ +I
Sbjct: 229 WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAI 285
Query: 106 NNSD 109
++ D
Sbjct: 286 HHHD 289
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 52 LLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTLSINN 107
+LA G++ + L+N T +++ ++ HS + C +++ LI S DKT+ I N
Sbjct: 285 ILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQFDQCK-LISGSMDKTIRIWN 339
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 31.1 bits (67), Expect = 0.50
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 40 PPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASE 99
P SC+ + Y+ LAV T G ++ K ++ + ++C W++ ILA+
Sbjct: 66 PISCIRFTYDGSCLAVATEAGTFLYHSEKWDKAFQVLSGPAYEVC---WSQQG-HILATS 121
Query: 100 DKTLSINNSD 109
K +SI D
Sbjct: 122 WKQISIYVKD 131
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 30.7 bits (66), Expect = 0.65
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 495 DLCPLREPKLFRGVIWDICLSDRNVFIVYTDDKIDTYYYVSNSINGSHVDLVASTS 550
D+ ++E F G+ WD S FI + +DT Y+ S + ++ +S +
Sbjct: 922 DINEIKEHPFFNGINWDDIFSHEAPFIPAPETPLDTAYFDSRGAGAAESNMSSSVN 977
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 26 HANKRLNIETGLREP----------PSCLAWAYEEPLLAVGTHKGNLALYN 66
H RLN+ET P P CL +A E LLAV T G L L++
Sbjct: 105 HVGGRLNLETYYSRPSECLMMLNQLPFCLGFANNESLLAVCTETGALELFD 155
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 20 VLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKH 79
V +W + K L G + + +E P + + + ++N + I I+ H
Sbjct: 77 VNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGH 136
Query: 80 SKKICCAVWN-KDNILILASEDKTLSINNSDG 110
S + CA ++ +++++ AS D+T+ + + G
Sbjct: 137 SHYVMCAAFHPSEDLIVSASLDQTVRVWDISG 168
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 44 LAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILA-SEDKT 102
L W+ + L G +L LY+ HT + + HS + W+ N I++ S D++
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
Query: 103 LSI 105
+ +
Sbjct: 194 ICL 196
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 40 PPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPI-IGKHSKKICCAVWN-KDNILILA 97
P +CLA++ + LA G G + LY+ ++ + I H+ +I WN K L A
Sbjct: 481 PITCLAYSPDGKYLACGDASGKVVLYDANSREVITSRWAFHTGRILGMSWNAKSTHLATA 540
Query: 98 SEDKTLSI 105
S D + I
Sbjct: 541 SLDTNIHI 548
>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 538 INGSHVDLVASTSILPGQIPLILFSGDVY 566
+N + ++T I+PG P+ILF G V+
Sbjct: 119 VNYKSIQSFSATPIVPGTKPMILFQGPVF 147
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 204 VGEELFQVKNHKDSLTDIAVCNGQAASCGDGQLKLISVWNNGEVSGSVMPTGGAERCGWS 263
+G+ + +K H+ S+ + G KLI +WN ++ S++ R
Sbjct: 126 LGQCKYVLKGHQSSVWAVLALGEDIFITGSAD-KLIKIWNGEKLVKSILAHNDCVRSLCQ 184
Query: 264 SDGRLLATSGRGYLNVYVTTLPPLYATYGTRALTLTSLTEVTVYQCI 310
G + S G + ++ + LY +G + + SLT + Q I
Sbjct: 185 IPGGFASCSNDGVIKLWTSDGEFLYELHGHTSF-VYSLTYIHNQQLI 230
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 3 WDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLR--EPPSCLAWAYEEPLLAVGTHKG 60
W G+Y +S +L A +R +ET + E C W++ E L + T G
Sbjct: 119 WSPSGNYCCA---SSRDDMLSFIDARERRIMETFQQPCETNEC-CWSFSEDLFFMTTGLG 174
Query: 61 NLALYNHHTTKRIPIIGKHSKKICCAVWNKDN 92
+ + + KR+ I H+ C ++ DN
Sbjct: 175 TVQIMEWPSLKRVYDIKAHNSNCFCIEFSPDN 206
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 52 LLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVW--NKDNILILASEDKTLSI 105
LL G+ L L++ T + HS K+ C W ++L+ S DKT I
Sbjct: 269 LLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKI 324
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 44 LAW--AYEEPLLAVGTHKGNLALYN----HHTTKRI---PIIGKHSKKICCAVWNKD 91
LAW E L VG GN+ +Y+ T+K + I H +++C WN D
Sbjct: 277 LAWKPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQVCGLTWNHD 333
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 215 KDSLTDIAVCNGQAASCGDGQLKLISVWNNGEVSGSV--MPTGGAERCG 261
KD + V + +CG LKL++ +GE+S S+ G ++CG
Sbjct: 116 KDLVVQYEVNPEEGLNCGGAYLKLLAEPTHGEMSNSIDYRIMFGPDKCG 164
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/98 (18%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 4 DNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLA 63
++ GD++AI + +L+WE + + + + S L ++ + + G G +
Sbjct: 305 NSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIITGADDGKIK 364
Query: 64 LYNHHTTKRIPIIGKHSKKICCAVWNK-DNILILASED 100
+++ ++ I +H+ + ++K N+L +S D
Sbjct: 365 VWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLD 402
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,975
Number of Sequences: 5004
Number of extensions: 116297
Number of successful extensions: 273
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 34
length of query: 644
length of database: 2,362,478
effective HSP length: 77
effective length of query: 567
effective length of database: 1,977,170
effective search space: 1121055390
effective search space used: 1121055390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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