Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001293-TA|BGIBMGA001293-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 44 4e-04
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 42 0.002
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433... 41 0.003
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 39 0.014
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 36 0.100
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 36 0.100
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 35 0.23
03_02_0464 - 8683232-8684596 31 2.1
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 31 2.8
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 31 2.8
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 31 3.7
01_05_0816 + 25462571-25462630,25462752-25462838,25462929-254629... 30 5.0
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 6.5
08_01_0630 - 5470869-5471429 29 8.7
07_03_0971 + 23038409-23039134,23040321-23040611 29 8.7
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 44.0 bits (99), Expect = 4e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 18 NAVLLWECHANKRLNI-ETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPII 76
N V LW ++K + + G+ + + WA LAVGT++G + +++ KRI +
Sbjct: 218 NCVYLWNACSSKVTKLCDLGVDDNVCSVGWAQRGTHLAVGTNQGKVQVWDATRCKRIRTM 277
Query: 77 GKHSKKICCAVWNKDNILILASEDKTL 103
H ++ WN ++L S DK++
Sbjct: 278 ESHRMRVGALAWN-SSLLSSGSRDKSI 303
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 41.9 bits (94), Expect = 0.002
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 3 WDNDGDYLAIITPNSNAVLLWECHANKRLNIE-TGLREPPSCLAWA---YEEPLLA-VGT 57
W DG++L + S ++LW+ K+L TG R+ + ++W + P V T
Sbjct: 132 WSPDGNHL-VSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQSPCRRFVST 190
Query: 58 HK-GNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTLSI-NNSDGDTLRI 115
K G+ +++ T K + + H+ + C W D ++ SED ++ + S G ++
Sbjct: 191 SKDGDARIWDMTTRKCVIALTGHTNSVTCVKWGGDGLIYTGSEDCSIKVWETSQGKLVKT 250
Query: 116 I 116
+
Sbjct: 251 L 251
Score = 30.3 bits (65), Expect = 5.0
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 20 VLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRI--PIIG 77
V W+ L G + C+AW+ + L G+ G L L++ T K++ P+ G
Sbjct: 106 VRFWDLSTQTPLFTCKGHKNWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQLGTPLTG 165
Query: 78 KHSKKICCAVWNKDNILILASEDKTLSINNSDGD 111
H K I W + L S + + DGD
Sbjct: 166 -HRKWITAVSWEP---VHLQSPCRRFVSTSKDGD 195
>01_07_0350 +
42941976-42942401,42942510-42942737,42943201-42943380,
42943515-42943730,42943854-42943955,42944377-42944439,
42944526-42944594,42945662-42945730,42947003-42947069,
42947449-42947514,42947600-42947697,42947820-42947857,
42947929-42948016,42948101-42948373,42948470-42948535,
42948624-42948779
Length = 734
Score = 41.1 bits (92), Expect = 0.003
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 18 NAVLLWECHANKRLNI-ETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPII 76
N V LW K + + G R+ + W E LA+GT G++ +++ KRI +
Sbjct: 172 NCVYLWSASNCKVTKLCDLGPRDSVCAVHWTREGSYLAIGTSLGDVQIWDSSRCKRIRNM 231
Query: 77 GKHSKKICCAVWNKDNILILASEDKTL 103
G H + W+ IL S DK +
Sbjct: 232 GGHQTRTGVLAWS-SRILSSGSRDKNI 257
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 38.7 bits (86), Expect = 0.014
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 3 WDNDGDYLAIITPNSNAVLLWECHANKRLNIE-TGLREPPSCLAWA---YEEPL--LAVG 56
W DG++L + S ++LW+ K+L TG R+ + ++W + P
Sbjct: 183 WSPDGNHL-VSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQAPCRRFVSA 241
Query: 57 THKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTLSI-NNSDGDTLRI 115
+ G+ +++ T K + + H+ + C W D ++ SED + + S G ++
Sbjct: 242 SKDGDARIWDITTRKCVIALTGHTNSVTCVKWGGDGLIYTGSEDCLIKVWETSQGKLVKT 301
Query: 116 I 116
+
Sbjct: 302 L 302
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 35.9 bits (79), Expect = 0.100
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLW------ECHANKRLNIETGLREP-PSCLAWAYEEPLL 53
+ +D DYLA I V+ W E + KR+ G + L W+ + L
Sbjct: 163 LSFDPRNDYLASID-TFGTVIFWDLCTGTEARSLKRIAPTFGSDHSINNALCWSPDGQFL 221
Query: 54 AVGTHKGNLALYNHHTTKRI-PIIGKHSKKICCAVWNKD-NILILASEDKTLSI 105
AV + N+ +Y+ T + + + G+H + +C W+ + L+ A DK + I
Sbjct: 222 AVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVTAGLDKQVLI 275
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 35.9 bits (79), Expect = 0.100
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 6 DGDYLAIITPNSNAVLLWEC-HANKRLNIETGLREPP----SCLAWAYEEPLLAVGTHKG 60
DGD+L ++ S A+ LW + R+N G + SC + E+ +A G+
Sbjct: 410 DGDFL-LVNLISEAIHLWNIRNCPIRVNRYAGHKRSRFVIRSCFGGS-EQAFIASGSEDS 467
Query: 61 NLALYNHHTTKRIPIIGKHSKKICCAVWNKDN--ILILASEDKTLSI 105
+ +++ T I + H+ + C WN N +L AS+D T+ I
Sbjct: 468 QIYIWHRATGDLIETLPGHTGTVNCVSWNPANPHMLASASDDHTIRI 514
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 34.7 bits (76), Expect = 0.23
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREP-PSCLAWAYEEPLLAVGTHK 59
+ W DG ++A+ NS+ + LW+ +N+ L G+ E LAW +L G
Sbjct: 197 VSWAPDGQHVAVGL-NSSDIQLWDTSSNRLLRTLRGVHESRVGSLAW--NNNILTTGGMD 253
Query: 60 GNLALYNHHTTKRIPIIGK---HSKKICCAVWN 89
GN+ N+ R ++ HS+++C W+
Sbjct: 254 GNIV--NNDVRIRNHVVQTYQGHSQEVCGLKWS 284
>03_02_0464 - 8683232-8684596
Length = 454
Score = 31.5 bits (68), Expect = 2.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 450 EEWRTSVRHRAAGALCAAYGDISGTRACLADTARRLLVYC 489
EE+R VR RAA CA G + C+AD RL YC
Sbjct: 286 EEYRDLVRARAARR-CAGAGAAAVEERCVADGNERLRFYC 324
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 31.1 bits (67), Expect = 2.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 44 LAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWN-KDNILILASEDKT 102
L W E LLA G++ G ++N + + KH I WN K + L+ S DKT
Sbjct: 334 LDWNGEGTLLATGSYDGQARIWNSDGELKQTLF-KHKGPIFSLKWNKKGDFLLSGSVDKT 392
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 31.1 bits (67), Expect = 2.8
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 472 SGTRACLADTARRLLVYCPAAPHDLCPLREPKLFRGVIWDICLSDRNVFIVYTDDKIDTY 531
+G+R C + R+ + P LC L P +FR V D+ R F + +D+I
Sbjct: 137 AGSRLCTRCSERKAALKRPKTLEQLC-LYAPHIFRVVCPDVSRQSRECFYIVFEDEIHQT 195
Query: 532 YYVSNSIN-GSHVDLVAS 548
+N G V + AS
Sbjct: 196 IVENNLFKPGDRVAIGAS 213
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 30.7 bits (66), Expect = 3.7
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 2 EWDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGN 61
EW+ + D LA++T +S V+L + + I G C W+ + ++A+GT G
Sbjct: 3 EWNPEKDLLAMVTDDSK-VVLHRFNWQRLWTISPGKCITSIC--WSPDGKIVALGTEDGL 59
Query: 62 LALYNHHTTK 71
+ L++ T K
Sbjct: 60 VLLHDVETDK 69
>01_05_0816 +
25462571-25462630,25462752-25462838,25462929-25462961,
25462962-25463030,25463146-25463339,25463632-25463773,
25464126-25464165,25464428-25464594,25465114-25465116,
25465371-25465499,25465811-25465888,25465974-25465979
Length = 335
Score = 30.3 bits (65), Expect = 5.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 40 PPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAV 87
P C A + PL+ VGT N+ ++N + + + S K C +
Sbjct: 164 PERCYALSLSYPLMVVGTADRNVIVFNMQNPQFYQVTFRESSKFCVQI 211
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.9 bits (64), Expect = 6.5
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREP-PSCLAWAYEEPLLAVGTHK 59
+ W DG ++A+ NS+ V LW+ +N+ L G+ + LAW +L G
Sbjct: 3102 VSWAPDGRHIAVGL-NSSDVQLWDTSSNRLLRTMRGVHDSRVGSLAW--NNNILTTGGMD 3158
Query: 60 GNLALYNHHTTKRIPIIGK---HSKKICCAVWN 89
G + N+ R ++ H +++C W+
Sbjct: 3159 GKIV--NNDVRIRNHVVQTYQGHQQEVCGLKWS 3189
>08_01_0630 - 5470869-5471429
Length = 186
Score = 29.5 bits (63), Expect = 8.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 580 DSHNTSGLADPDTEKRVANQRKHIEKMLLLRRFSDAWLFCDAVDEPDVWRRLGEAAIADL 639
D+ + +G D + ++ HIE ++ + +W A DEP +WRR+ ADL
Sbjct: 87 DARDWAGGLPLDAILAIFHKLDHIEILMGAGQVCRSWRRA-ARDEPQLWRRIDMRGHADL 145
Query: 640 NVE 642
+ E
Sbjct: 146 SFE 148
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 29.5 bits (63), Expect = 8.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 42 SCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNI-LILASED 100
SC+ ++ LLA + G +AL + + I + H+ + W+ D+ L AS+D
Sbjct: 29 SCVRFSPCGRLLATASLDGTVALLSPSSLAAIATLRGHADGVSDISWSTDSFYLCSASDD 88
Query: 101 KTLSI 105
+TL I
Sbjct: 89 RTLRI 93
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,664,098
Number of Sequences: 37544
Number of extensions: 830613
Number of successful extensions: 1636
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1624
Number of HSP's gapped (non-prelim): 26
length of query: 644
length of database: 14,793,348
effective HSP length: 87
effective length of query: 557
effective length of database: 11,527,020
effective search space: 6420550140
effective search space used: 6420550140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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