Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001293-TA|BGIBMGA001293-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25811| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-20
SB_17827| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 1e-18
SB_49060| Best HMM Match : Ets (HMM E-Value=6.9) 90 6e-18
SB_11622| Best HMM Match : TPR_2 (HMM E-Value=2.2) 63 6e-10
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 41 0.003
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 38 0.033
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 37 0.058
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.076
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09) 35 0.18
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42) 33 0.54
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 32 1.6
SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056) 32 1.6
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27) 32 1.6
SB_46201| Best HMM Match : WD40 (HMM E-Value=0) 31 2.2
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.8
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 29 8.7
>SB_25811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 98.7 bits (235), Expect = 1e-20
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 7/119 (5%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKG 60
M WD DGD LAII + + LW+ ++ K +E+GLR+ + L W+ P LA+GT KG
Sbjct: 135 MAWDKDGDTLAIIQDKNGIIYLWDANSLKTTQLESGLRDTLTFLLWSKVGPQLAIGTSKG 194
Query: 61 NLALYNHHTTKRI----PIIG-KHSKKICCAVWNKDNILILASEDKTLSINNSDGDTLR 114
NL +YNH T++R P++G H I + N+L L SEDK+++I+N DGDT+R
Sbjct: 195 NLLIYNHQTSRRYKVLDPLLGVVHGWFI--DYFFLQNLLALGSEDKSITISNEDGDTIR 251
>SB_17827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 159 PDNPIELAFQQRYGSIVSYKWYGDGYXXXXXXXXXXXXXXTHIKEVGEELFQVKNHKDSL 218
P+ P ELAFQ RYG+I++Y+W+GDGY TH+KE+G+ELFQ ++HKD L
Sbjct: 37 PEIPNELAFQSRYGNIIAYRWFGDGYIMIGFSNGFFVVISTHMKEIGQELFQTRDHKDVL 96
Query: 219 TDIAVCN--GQAASCGD 233
TDIA+ +AASCGD
Sbjct: 97 TDIAISTELNKAASCGD 113
>SB_49060| Best HMM Match : Ets (HMM E-Value=6.9)
Length = 236
Score = 89.8 bits (213), Expect = 6e-18
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 92 NILILASEDKTLSINNSDGDTLRIISLRDTPNDLQVSEMKTDER-VAGENTVSLIVGKRT 150
N+L L SEDK+++I+N DGDTLR +LR P +Q SEMKTDER A E TVS+IVGK+T
Sbjct: 1 NLLALGSEDKSITISNEDGDTLRQATLRSEPAHVQFSEMKTDERSSAAEATVSIIVGKKT 60
Query: 151 XXXXXXXXPDNPIELAFQ 168
P+NPIELAFQ
Sbjct: 61 LYLYNLNDPENPIELAFQ 78
Score = 78.6 bits (185), Expect = 1e-14
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 170 RYGSIVSYKWYGDGYXXXXXXXXXXXXXXTHIKEVGEELFQVKNHKDSLTDIAVCN--GQ 227
RYG+I++Y+W+GDGY TH+KE+G+ELFQ ++HKD LTDIA+ +
Sbjct: 112 RYGNIIAYRWFGDGYIMIGFSNGFFVVISTHMKEIGQELFQTRDHKDVLTDIAISTELNK 171
Query: 228 AASCGDGQLKLISVWNNGEVSGSVMPTGGAERCGWSSDGRLLATSGRGYLNVYVTTLPPL 287
AASCGD ++ +N + S S + R W++ RL +TT P +
Sbjct: 172 AASCGDNCIQDKINRDNEKKSASKVEFW--FRFSWANKTRLTKIRSSAPRGSLLTTKPSM 229
>SB_11622| Best HMM Match : TPR_2 (HMM E-Value=2.2)
Length = 299
Score = 63.3 bits (147), Expect = 6e-10
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 506 RGVIWDICLSDRNVFIVYTDDKIDTYYYVSNSINGSHVDLVASTSILPGQIPLILFSGDV 565
+G++W+ D++VF Y D+KI TY + +I G H + ST + Q PL+L+ G++
Sbjct: 16 KGIVWENWALDKDVFCGYDDEKIYTYIFYKETITGPHCIMAGSTKLPYAQKPLMLYDGEM 75
Query: 566 YCYASGGSIIKVPLDSH 582
C G KV L +H
Sbjct: 76 TCQTLSGKTAKVTLSTH 92
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 41.1 bits (92), Expect = 0.003
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHANKRLNI-ETGLREPPSCLAWAYEEPL---LAVG 56
++W N+ + L++ + AV +W ++ ++ + E S +AW E + LAVG
Sbjct: 206 LDWGNN-NLLSLAL--AGAVYIWNAESSDIKHLFQMDEGEYVSSVAWVQEHSMTQYLAVG 262
Query: 57 THKGNLALYNHHTTKRIPIIGKHSKKICCAVWN 89
TH GN+ L++ +K + +G H+ ++ WN
Sbjct: 263 THDGNVQLWDVEASKCVRCMGGHAARVGSLSWN 295
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 37.5 bits (83), Expect = 0.033
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 5 NDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAY--EEPLLAVGTHKGNL 62
N G+ +++T SN + +W C + ++ + +CL+ A+ ++ ++A+G +
Sbjct: 688 NQGE--SVVTVCSNCIKVWSCSSGEQTWV---YNSSSTCLSLAFSPDDSIVAMGFSDTTV 742
Query: 63 ALYNHHTTKRIPIIGKHSKKICCAVWNKDNI-LILASEDKTLSINNSDGDTLR 114
L+N T R+ + H +KD+ L+ SED+T+ I D D +
Sbjct: 743 QLWNSKTFARLGVYKGHKGWAHSVGISKDSSKLVSGSEDETVKIWTIDRDAAK 795
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 36.7 bits (81), Expect = 0.058
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 44 LAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKDNILILASEDKTL 103
++W+ L++VGT+KG + +++ K++ + HS ++ WN D +L S D+ +
Sbjct: 69 VSWSERNGLVSVGTYKGLVQIWDASAQKKLLTMDGHSARVGALAWNGD-MLSSGSRDRLI 127
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 36.3 bits (80), Expect = 0.076
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 20 VLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKH 79
+++W RL++ G + SCL ++E L G+H + +++ T + + ++ H
Sbjct: 584 IMVWHIVKFTRLHVLYGHKGCVSCLR--FDENTLVSGSHDSTIRVWDMRTWECVLVLQGH 641
Query: 80 SKKICCAVWNKDNILILASEDKTLSI-NNSDGDTLRII 116
+ C ++ +L S DKT+ + N GD L +
Sbjct: 642 EGAVSCLEFDAPFVL-SGSADKTIKLWNVESGDCLNTL 678
>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
Length = 743
Score = 35.1 bits (77), Expect = 0.18
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 42 SCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNKD-NILILASED 100
+ + W +LAVG G+L L+N H + H I WN N L+ ED
Sbjct: 45 TAIKWHPSRKILAVGWQSGDLLLWNDHDHELHEAFSAHKAAIKTIEWNSSGNKLVTGDED 104
Query: 101 KTL 103
T+
Sbjct: 105 GTV 107
>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
Length = 383
Score = 33.5 bits (73), Expect = 0.54
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 6 DGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAY----EEPLLAVGTHKGN 61
DG LA + + V LW + L G +P + A+ + + P+LA + G+
Sbjct: 62 DGKTLATCSADCT-VGLWNITTGELLRTLVGHEKPVTNCAFMWGPSLKTPILATASEDGD 120
Query: 62 LALYNHHTTKRIPIIGKHSKKICCAVWNKD-NILILASEDKTL 103
+ L+++ + KR + H K + V+ KD L +S D T+
Sbjct: 121 VILWHYDSGKRAARLAVHCKAVTDCVFAKDGRALATSSLDGTI 163
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 31.9 bits (69), Expect = 1.6
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 4 DNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLA 63
D+ G+ +A + ++ + +W + L + G P S LA++ P+L G +
Sbjct: 1345 DSSGEVVAAGSRDTFEIFVWSIQTGRLLEVLAGHEAPVSSLAFSPSHPVLISGAWDKTVR 1404
Query: 64 LYNHHTTK 71
L+N +K
Sbjct: 1405 LWNVFESK 1412
Score = 30.7 bits (66), Expect = 3.8
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 7 GDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYN 66
G++LA + +L+WE + + + G + LA++ + +A G G + L+N
Sbjct: 1220 GEWLAFGCTSLGQLLVWEWQSESYILKQQGHYYDMNVLAYSPDGNYIATGGDDGKVKLWN 1279
Query: 67 HHTTKRIPIIGKHSKKICCAVWNKDNILIL-ASEDKTL 103
T +HS + ++ + ++L AS D T+
Sbjct: 1280 TMTGFCFVTFHEHSASVTAVTFSPNGQVVLSASLDGTV 1317
>SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)
Length = 272
Score = 31.9 bits (69), Expect = 1.6
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 202 KEVGEELFQVKNHKDSLTDIAVCNGQAASCGDGQLKLISVWNNGEVSGSVMPTGGAERCG 261
+E+G+ + + N D + N + S D ++L W E P + C
Sbjct: 113 EEIGDTVAVIDN--DLVNKQYAVNYKRLSTSDLPVQLTGAWREFEQR----PDNFLKGCK 166
Query: 262 WSSDGRLLATSGRGYLNVYVTTLPPLYATYGTRALTLTSLTEVT 305
WS DG L T+ ++ + LP T G + LT + E+T
Sbjct: 167 WSPDGSCLLTNSDDN-SLRIFNLPSELYTIGADSSQLTEMDEIT 209
>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
Length = 855
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 52 LLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNK----DNILILASEDKTLSINN 107
LLAVG GN+ +Y+ K I H ++ C ++ N+L+ A D+ + + N
Sbjct: 602 LLAVGDKIGNVRIYDTVHMKERYKISAHESEVLCVEFSPLKSGYNLLVSAGRDRLIHVYN 661
Query: 108 SDGDTLRIISLRD 120
+ D + +L D
Sbjct: 662 ASEDFTLLQTLDD 674
>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
Length = 292
Score = 31.5 bits (68), Expect = 2.2
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 1 MEWDNDGDYLAIITPNSNAVLLWECHANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKG 60
++ DN+ D L + N W ++N+ +N G CLA + LL G+
Sbjct: 161 IDLDNNDDIL-VTGSADNTAKAWGMNSNECMNTFKGHEGAILCLAVDGKGRLLFTGSSDS 219
Query: 61 NLALYNHHTTKRIPIIGKHSKK-ICCAVWNKDNILILASEDKT 102
+ ++ HT + HS IC V NK ++ +S D T
Sbjct: 220 TIRSWDLHTYSPLKSFKGHSASVICIQVVNK--LMYSSSADHT 260
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 31.1 bits (67), Expect = 2.9
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 18 NAVLLWECHANKRLNIETGLREPPSC-LAWAYEEPLLAVGTHKGNLALYNHHTTKR-IPI 75
N+V +W+ + + T +RE + L +++ +L G + ++ +++ + R I
Sbjct: 216 NSVKVWDLRGS--IVEMTSIREHRAAVLCMEWKQDVLVTGCYDKHVRMFDLRDSNRVIAK 273
Query: 76 IGKHSKKICCAVWNKDNILILASEDKTLSI 105
+ HS+ + C + D+ ++ SEDKT+ +
Sbjct: 274 LKYHSRPVLCLTVD-DHFIVSGSEDKTMCV 302
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 30.7 bits (66), Expect = 3.8
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 42 SCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHSKKICCAVWNK--DNILILASE 99
SC ++ LA G+ + +++ + I ++ H++ + C WN +++ AS+
Sbjct: 210 SCFGGVNQD-FLASGSEDHQVYIWHVKNERPIAVLCGHTRTVNCVTWNPLVPSMMASASD 268
Query: 100 DKTLSI-NNSDGDTLRIISLRDTPNDLQVSEMKTDE 134
D T+ I S +T +++R P+ L +E DE
Sbjct: 269 DGTVRIWGPSTEETSGNLAIR-PPSVLWYTERSKDE 303
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 29.5 bits (63), Expect = 8.7
Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 23 WEC--HANKRLNIETGLREPPSCLAWAYEEPLLAVGTHKGNLALYNHHTTKRIPIIGKHS 80
W C HA ++ + + CL Y++ + G + +++ + + ++ H+
Sbjct: 173 WRCGNHALHKIPCRSENSKGVYCLQ--YDDHKIVSGLRDNTIKVWDKKSLACVKVLTGHT 230
Query: 81 KKICCAVWNKDNILILASEDKTLSI-NNSDGDTLRII 116
+ C ++ +N+++ S D T+ + N GD L +
Sbjct: 231 GSVLCLQYD-ENVIVTGSSDSTVRVWNVHAGDMLNTL 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,743,272
Number of Sequences: 59808
Number of extensions: 893502
Number of successful extensions: 1593
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 29
length of query: 644
length of database: 16,821,457
effective HSP length: 87
effective length of query: 557
effective length of database: 11,618,161
effective search space: 6471315677
effective search space used: 6471315677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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