GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001293-TA|BGIBMGA001293-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (644 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   4.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 262 WSSDGRLLATSGRGYLNVYVT 282
           W+ DG  L T+GR  +  YVT
Sbjct: 455 WALDGFALPTNGRFMIGQYVT 475


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 262 WSSDGRLLATSGRGYLNVYVT 282
           W+ DG  L T+GR  +  YVT
Sbjct: 455 WALDGFALPTNGRFMIGQYVT 475


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 478 LADTARRLLVYC-PAAPHDLCPLREPKLFRGVIWDICLSDRNVFIVYTDDKIDTYYYVSN 536
           +A +  R L  C P   + +  L+ P  F    W I L     F +YT  K++   Y   
Sbjct: 133 VAFSMERYLAICHPLRVYTISGLKRPIRFILAAWLIALISAIPFAIYT--KVNLVEYPPE 190

Query: 537 SINGSHVDLVASTSILPGQIPLILFSGDVY 566
           S N S    + +   +    PL   S  ++
Sbjct: 191 SGNYSADSAMCAMLTIYADFPLYELSTIIF 220


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,325
Number of Sequences: 429
Number of extensions: 7292
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 644
length of database: 140,377
effective HSP length: 62
effective length of query: 582
effective length of database: 113,779
effective search space: 66219378
effective search space used: 66219378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)