Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001292-TA|BGIBMGA001292-PA|IPR001199|Cytochrome b5
         (195 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   4e-39
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               85   5e-17
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                75   5e-14
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             30   1.5  
SB_12710| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)                    29   2.5  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   5.9  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  157 bits (382), Expect = 4e-39
 Identities = 85/172 (49%), Positives = 110/172 (63%), Gaps = 4/172 (2%)

Query: 15  SGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAVELR 74
           S     L +L     I  + V  FVI      K+     +  P +  P  ++D T  EL+
Sbjct: 8   SSILNFLSSLSSPIQIVLLIVLVFVIRRILKAKFDKVPEEPPPKRLEPFKKRDFTLDELK 67

Query: 75  QYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV--TAPEKD 132
           +YDG +    VLMAVNG +FDVTRG  FYGPGGPY+ F G DA+RGLATFS+   A + +
Sbjct: 68  EYDGLKSP-YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATFSLGPEAIKDE 126

Query: 133 YDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNY-SDEEPEEAD 183
           YDDLSDLN M+ +S+REWE+QF E YDLVGRLL+PGE+ + Y ++EE EE D
Sbjct: 127 YDDLSDLNGMQQDSLREWEQQFDEKYDLVGRLLKPGEKHQQYETEEETEEED 178


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 66  KDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFS 125
           ++ T  EL+ YDG  +   + +AVNG +FDVT    ++GP GP  +  G+DA+R L TFS
Sbjct: 72  REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130

Query: 126 V-----TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLL 165
           V     T      DDL+DLN ++ + + E+E Q+ E Y  VGRL+
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLV 175


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 68  MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 127
           ++  +L ++DG+Q    + +A+ G ++DV +G RFYGPG  Y VF GRD+T    T  + 
Sbjct: 88  LSTEDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVT-GMF 146

Query: 128 APEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLL 165
              K  DD S+L + ++  ++ W E ++++Y  VG+++
Sbjct: 147 DRAKATDDCSNLKNEDLLGIKGWMEFYQKDYKYVGKVV 184


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 68  MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 127
           ++ V+L ++DG Q    + +A+ G ++DV +G RFYGPG  Y VF GRD+T    T  V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331

Query: 128 A 128
           +
Sbjct: 332 S 332


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 60  KLPKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATR 119
           K+    K  T  EL  ++G      + +AV G +FDV+     YG G  Y    G++ +R
Sbjct: 40  KITPGHKLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSR 99

Query: 120 GLATFSVTAPEKDYDDLSDLNSMEMESV-REWEEQFRENYDLVGRLLRPGEEPR 172
            +A +S+ A E    +L  L   E++ + + + + +   Y +VG +   G EPR
Sbjct: 100 AIAKWSLAA-ENMNGNLDGLTKDELQRLEKNFHDVYMRKYPVVGYM--HGFEPR 150


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 129  PEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSAL 187
            PE D +D  D +  + E+    +E+  ++YDL   + RPG   R + DE   +   SAL
Sbjct: 1582 PEPDDEDEDDDDDEDEEN----DEENEDDYDLSEEVERPGTRRRTWDDEFVLKRQFSAL 1636


>SB_12710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 134 DDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSALPNDDKK 193
           +D+S+L     E+     EQF   +DLVG +L         S+EE E+     +P ++ K
Sbjct: 5   EDMSELT----ENTFSQAEQFLPAFDLVGTILTTSRNISILSEEEVEKRKDDRIP-ENTK 59

Query: 194 TN 195
           TN
Sbjct: 60  TN 61


>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
          Length = 1294

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 137 SDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSD 176
           +D    E + V       R  Y  +G++++PGE+PR   +
Sbjct: 659 TDAVEEEQDQVSRRTATLRSTYSRLGKIVKPGEQPRKVGE 698


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 40 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 81
          +L +FY  +  HC  +AP   K   +L+ + + ++L + D T E
Sbjct: 44 VLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAE 87


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 130  EKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSALPN 189
            E+D   L DL   E E  R  EE+      +   + R  E+ R   +EE   A+   +  
Sbjct: 1212 EEDRKRLEDLKRFEDEKRRAEEEKKSAELRIAEEVRRKAEQARRQEEEERRRAEEERMEE 1271

Query: 190  D 190
            +
Sbjct: 1272 E 1272


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 128  APEKD--YDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTS 185
            AP+KD   +++ D      +  +EW+E FRE  + +  + R  +   +       + DT+
Sbjct: 1772 APKKDNPLEEVDDRKLKRAQEEKEWDEAFREEREQIELMKRAQDAELDVDIVNNNDVDTN 1831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,199,806
Number of Sequences: 59808
Number of extensions: 296976
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 16,821,457
effective HSP length: 78
effective length of query: 117
effective length of database: 12,156,433
effective search space: 1422302661
effective search space used: 1422302661
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)