GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001292-TA|BGIBMGA001292-PA|IPR001199|Cytochrome b5
         (195 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 17  FFETLKTLFCQPFIYFVFVSTFVI-LYKFY 45
           +F  +  LFC  FI F     F++ +Y FY
Sbjct: 260 YFYYMHLLFCCAFIIFTMHLLFLLCIYYFY 289



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 20  TLKTLFCQPFIYFVFVSTFVILYKFY 45
           T+  LFC  FI+F     F++   ++
Sbjct: 177 TMHLLFCCAFIFFNMHLLFLLCLDYF 202


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 72  ELRQYDGTQEGGRVLMAVNGWIF 94
           +L +Y+  +EG +V+  +  W F
Sbjct: 626 DLLEYEAKEEGPKVVCYMTNWAF 648


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 127  TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLV 161
            T P+   DDL +   +E   VR+ E +F  + +++
Sbjct: 1200 TVPQNKRDDLVNPYWIEDPDVRKGEVEFLSSTEIL 1234


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 127  TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLV 161
            T P+   DDL +   +E   VR+ E +F  + +++
Sbjct: 1200 TVPQNKRDDLVNPYWIEDPDVRKGEVEFLSSTEIL 1234


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 127  TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLV 161
            T P+   DDL +   +E   VR+ E +F  + +++
Sbjct: 1200 TVPQNKRDDLVNPYWIEDPDVRKGEVEFLSSTEIL 1234


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 127  TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLV 161
            T P+   DDL +   +E   VR+ E +F  + +++
Sbjct: 1200 TVPQNKRDDLVNPYWIEDPDVRKGEVEFLSSTEIL 1234


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,361
Number of Sequences: 317
Number of extensions: 2074
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 195
length of database: 114,650
effective HSP length: 54
effective length of query: 141
effective length of database: 97,532
effective search space: 13752012
effective search space used: 13752012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)