GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001292-TA|BGIBMGA001292-PA|IPR001199|Cytochrome b5
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.63 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 143 EMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEE 181
           EME +RE E + RE+ D V    +  ++ +   D++ ++
Sbjct: 68  EMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQ 106


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 53  SKVAPLKKLPKLRKDM 68
           S++A  K+ PKLRKDM
Sbjct: 357 SELAKAKERPKLRKDM 372


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 53  SKVAPLKKLPKLRKDM 68
           S++A  K+ PKLRKDM
Sbjct: 272 SELAKAKERPKLRKDM 287


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 53  SKVAPLKKLPKLRKDM 68
           S++A  K+ PKLRKDM
Sbjct: 591 SELAKAKERPKLRKDM 606


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 104 GPGGPYAVFGGRDATRGLATFSVTAPEK 131
           GP  P AV    +AT  + T + T P +
Sbjct: 237 GPATPSAVVATSNATAAMTTGTTTIPTR 264


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 33  VFVSTFVILYKFYYKYKTHCSK 54
           VF S +  +  +Y+KYK +  K
Sbjct: 416 VFFSIYKTILDYYHKYKENLPK 437


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 33 VFVSTFVILYKFYYKYKTHCSK 54
          VF S +  +  +Y+KYK +  K
Sbjct: 42 VFFSIYKTILDYYHKYKENLPK 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,414
Number of Sequences: 429
Number of extensions: 2500
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)