Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001292-TA|BGIBMGA001292-PA|IPR001199|Cytochrome b5
(195 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein... 101 3e-22
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein... 97 9e-21
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein... 85 3e-17
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein... 74 7e-14
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 31 0.39
At4g11750.1 68417.m01874 kelch repeat-containing F-box family pr... 30 1.2
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 1.6
At5g45960.1 68418.m05651 GDSL-motif lipase/hydrolase family prot... 29 2.1
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 29 2.1
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 28 3.6
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s... 28 4.8
At3g52220.1 68416.m05737 expressed protein 27 8.4
At1g22230.1 68414.m02779 expressed protein ; expression supporte... 27 8.4
>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 220
Score = 101 bits (242), Expect = 3e-22
Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 67 DMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV 126
++T EL+QYDG+ +LMA+ I+DVT+ FYGPGGPYA+F G+DA+R LA S
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 133
Query: 127 TAPEKDYD-DLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEE 181
EKD D+S L E++++++WE +F Y VG + G EP S EP E
Sbjct: 134 --EEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTE 187
>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
similar to SP|O00264 Membrane associated progesterone
receptor component (mPR) {Homo sapiens}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 233
Score = 96.7 bits (230), Expect = 9e-21
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 67 DMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV 126
++T EL+ YDG+ +LMA+ G I+DV++ FYGPGGPYA+F G+DA+R LA S
Sbjct: 70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF 129
Query: 127 TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSA 186
+ D+S L + E+E++++WE +F Y VG + + E + S EP EA T++
Sbjct: 130 EDQDLT-GDISGLGAFELEALQDWEYKFMSKYVKVGTIQKKDGEGKESS--EPSEAKTAS 186
>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 100
Score = 85.0 bits (201), Expect = 3e-17
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 67 DMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV 126
+ TA +L QY+GT E + +A+ G +FDVT G FYG GG Y++F G+DA+R L S
Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSK 61
Query: 127 TAPEKDYD-DLSDLNSMEMESVREWEEQFRENYDLVGRLL 165
E+D L L E+ ++ +WE +F Y +VGR++
Sbjct: 62 N--EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99
>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
similar to SP|O15173 Membrane associated progesterone
receptor component 2 (Steroid receptor protein DG6)
{Homo sapiens}; contains Pfam profile PF00173:
Heme/Steroid binding domain
Length = 245
Score = 73.7 bits (173), Expect = 7e-14
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 32 FVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAVELRQYDGTQEGGRVLMAVNG 91
FV V+ V+L Y++ + K+L +A EL Y+GT E +L+ + G
Sbjct: 12 FVGVTFIVVLVSLYFRSSFKSPQHQYQKRL------FSAEELALYNGTDETLPILLGILG 65
Query: 92 WIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTAPEKDYDDLSDLNSMEMESVREWE 151
+FDVT+G YG GG Y F GRDA+R + + T + D L L+S E++S+ +W
Sbjct: 66 SVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSGNFTG-DGLTDSLQGLSSSEVKSIVDWR 124
Query: 152 EQFRENYDLVGRLL 165
+ Y VG+L+
Sbjct: 125 GFYSRTYTPVGKLV 138
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 107 GPYAVFGGRDATRGL-ATFSVTAPEKD-YDDLSDLNSMEMESVREWEEQFRENYDLVGRL 164
G Y GR RGL T +V +D D SDL + + S E QFR Y ++ L
Sbjct: 769 GEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRLESQFRLTYIMILHL 828
Query: 165 LRPGE 169
LR E
Sbjct: 829 LRVEE 833
>At4g11750.1 68417.m01874 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 386
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 58 LKKLPKLRKDMTAVELRQYDG 78
LKKLPKL KD T V L Y G
Sbjct: 304 LKKLPKLPKDCTCVRLLGYSG 324
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 147 VREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSALPNDDKK 193
VR+ E Q ++N G+ N +DEEP + +T A N+ +K
Sbjct: 1682 VRKIEVQRKDNDQSFVEKDTSGKAKENLNDEEPTKTETKATDNESRK 1728
>At5g45960.1 68418.m05651 GDSL-motif lipase/hydrolase family
protein
Length = 375
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 34 FVSTFVILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAV 71
+VS + L+ F+ + + SK+ P K PK + ++A+
Sbjct: 11 YVSFILFLFLFFISFSSSTSKLEPAKSEPKRKHSVSAI 48
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 130 EKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGE 169
++ Y L + N +E ++EW+ +F E L+G +R E
Sbjct: 288 QRQYAALPEENEDTIEELKEWKSKFEERLALLGTKIRKME 327
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 132 DYDDLSD----LNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSAL 187
DY DL L E ES W+ EN++ + + ++YSD P++ + L
Sbjct: 246 DYIDLQQQVPYLAPYENESEMIWKHVIEENFEFL--VDERTSMQQHYSDHRPKKPVSGVL 303
Query: 188 PNDDKKT 194
P+D T
Sbjct: 304 PDDSSDT 310
>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
similar to protein disulfide isomerase precursor
GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
PF00085 Thioredoxins
Length = 508
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 19 ETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPL 58
E +K + + VF S +L +FY + HC K+AP+
Sbjct: 372 EPVKVVVAESLDDIVFKSGKNVLIEFYAPWCGHCQKLAPI 411
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 166 RPGEEPRNYSDEEPEEADTSALPND 190
RP E+P + + E+AD++ LP D
Sbjct: 137 RPWEDPSTLASSQKEDADSARLPAD 161
>At1g22230.1 68414.m02779 expressed protein ; expression supported
by MPSS
Length = 314
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 147 VREW-EEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSALPNDDKKTN 195
V+ W EE+ E + R+ + GEE D + D +L ++KK N
Sbjct: 226 VKNWSEEKKEETEEGDNRVKQSGEEEEEEKDRVGNKKDLRSLMEEEKKMN 275
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.137 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,123,106
Number of Sequences: 28952
Number of extensions: 222004
Number of successful extensions: 623
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 14
length of query: 195
length of database: 12,070,560
effective HSP length: 77
effective length of query: 118
effective length of database: 9,841,256
effective search space: 1161268208
effective search space used: 1161268208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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