Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001291-TA|BGIBMGA001291-PA|IPR000917|Sulfatase
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    49   2e-06
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    29   2.0  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    29   2.0  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    28   2.7  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 41/232 (17%)

Query: 25  NILFILIDDLRHLS----DKKVYLPNINFLGKTGATFNNAFAQQALCAPSRNSLLTGRRP 80
           N L I+ DDL          +++ PNI  L K G    N F   + C+P+R+ LL+G   
Sbjct: 13  NFLVIVADDLGWSDVSPFGSEIHTPNIERLAKEGVRLTN-FHTASACSPTRSMLLSGTDN 71

Query: 81  DSLRLYD-------FYSYWRDRSNGQG----NFTTIPQFFKEHGYDTYSVGKVFHPGKSS 129
               L         F   W  +   +G        +P+  +E GY T   GK +H G + 
Sbjct: 72  HIAGLGQMAETVRRFSKVWGGKPGYEGYLNDRVAALPEILQEAGYYTTMSGK-WHLGLTP 130

Query: 130 N-------FTDDY---PYSWSEYPYHPPTEMYKDAKVCRNKKTKKLERNLICPVSVKRQP 179
           +       F + +   P   + + Y P T             T   +     PV  K   
Sbjct: 131 DRYPSKRGFKESFALLPGGGNHFAYEPGTRENPAVPFLPPLYTHNHD-----PVDHK--- 182

Query: 180 GQSLPDLQSLDY----AIDFLKKRNGSKPFFLAIGFHKPHIPLKFPKEYLKQ 227
             SL +  S +Y     ID LK R  S+ FF  + F  PH PL+ PKEY+ +
Sbjct: 183 --SLKNFYSSNYFAEKLIDQLKNREKSQSFFAYLPFTAPHWPLQSPKEYINK 232


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 141 EYPYHPPTEMYKDAKVCRNKKTKKLERNLICPVSVKRQPGQSLPD 185
           E+P + PT + + AK+ +N   ++LER +   +  ++     L D
Sbjct: 829 EHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLED 873


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 392 GKSLVPFIEN-NSNGLEAF--AISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYT 448
           G+++   +EN N  G   F  AISQ   P+ Y  KN     +K +TI G+ +     +Y 
Sbjct: 238 GETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQ 297

Query: 449 EWISXXXXXXXXXXXXXYGIELYD 472
           E                Y  ++YD
Sbjct: 298 EQYFEEMPKLIAEGKIKYKCDVYD 321


>SPAC23G3.05c |||regulator of G-protein signaling
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 68 APSRNSLLTGRRPDSLRLYDFYSYWRDRSN 97
          AP  + +LT +    L LY+FY Y RD  N
Sbjct: 4  APRVSEVLTKKNLPPLSLYNFYIYIRDEEN 33


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,024
Number of Sequences: 5004
Number of extensions: 124201
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 4
length of query: 508
length of database: 2,362,478
effective HSP length: 76
effective length of query: 432
effective length of database: 1,982,174
effective search space: 856299168
effective search space used: 856299168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)