GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001291-TA|BGIBMGA001291-PA|IPR000917|Sulfatase
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1449 - 27174451-27178005                                         33   0.54 
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    31   1.6  
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259...    31   2.9  
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362...    30   3.8  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    30   3.8  
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472...    29   8.7  
03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370...    29   8.7  
01_06_0415 + 29185332-29185443,29186043-29186432,29186794-291871...    29   8.7  

>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 20/140 (14%)

Query: 320  SLGENGLWAKYSNF-DYALKVPLIFKSPKLIPTV-VHEPVELIDIFPTLVDLTKLSDEIP 377
            SL  +GL   Y  F +  L++P   K P  + T+ ++E   L+ + P L  L KL D   
Sbjct: 1043 SLFPSGLEKLYIEFCNNLLEIP---KLPASLETLRINECTSLVSLPPNLARLAKLRDL-- 1097

Query: 378  KCLNHKDTSQLCFEGKSLVPFIENNSNGLEAFAISQCPRPSVYPQKNSDK-PRLKDITIM 436
                   T   C   ++L P + +   GL+   + QCP     PQ    + P L+ +  +
Sbjct: 1098 -------TLFSCSSLRNL-PDVMDGLTGLQELCVRQCPGVETLPQSLLQRLPNLRKLMTL 1149

Query: 437  GYSIRTKRYR----YTEWIS 452
            G     KR R    Y E++S
Sbjct: 1150 GSHKLDKRCRRGGEYWEYVS 1169


>06_03_0785 -
           24563310-24565004,24565302-24565384,24565484-24566039,
           24566397-24566513,24566565-24567131,24568632-24568702,
           24569833-24569903,24570270-24570441,24571229-24572212,
           24573128-24574808
          Length = 1998

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 328 AKYSNFDYALKV---PLIFKSPKL--IPTVVHEPVELIDIFPTLVDLTKLSD-EIPKCLN 381
           A +S+ DYA  V    LI + PKL  +P V   PV++ ++ P+ +  T+ +D  +  C+ 
Sbjct: 605 ADWSSIDYAFPVLHDVLISRCPKLKELPPVFPPPVKM-EVLPSTIVYTQHTDHRLDTCIT 663

Query: 382 HKDTSQLCFEG 392
            K+ S     G
Sbjct: 664 QKEVSLTSLSG 674


>03_05_0582 +
           25823862-25824459,25824915-25825063,25825691-25825960,
           25826031-25826161,25826545-25826662,25826737-25826829,
           25826987-25827064,25827158-25827224,25828780-25829111
          Length = 611

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 293 IDELIGILLSYVDMQKTIIVLTSDHGWSLGENGLWAKYSNFDYALKVPLIFKSP 346
           I++  GI++ + D++KT I+LTS   W +     +  +S  DYA +  +I + P
Sbjct: 204 INQCTGIVVEWDDVKKTAIILTS--AWIICTKKPFDDWSYKDYAPEAKVIVRIP 255


>11_01_0467 +
           3621266-3621401,3621531-3622699,3622815-3623128,
           3623276-3623937,3624040-3624401
          Length = 880

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 40  KKVYLPNINFLGKTGATFNNAFAQQALCAPSRNSLLTGRRPDSLRLYDFYSYWRDRSNGQ 99
           K + L   +F G+  A+  +    Q L   S N L  GR PD     +  S W DR+N  
Sbjct: 59  KSLSLGKNSFFGEIPASLGHLHRLQTLVL-SYNKL-QGRIPDLANCSNLRSLWLDRNNLV 116

Query: 100 GNFTTIPQFFKE 111
           G    +P   +E
Sbjct: 117 GKIPNLPPRLQE 128


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 134 DYPYSWSEYPYHPPTEMYKDAKVCRNKKTKKLERNLI 170
           D+ YS SE P+H   E   +  VC + K ++L +N++
Sbjct: 747 DFTYSSSEVPHHVSDECLSELAVC-SYKARRLPKNIL 782


>06_01_0653 -
           4720913-4721152,4721898-4721966,4722059-4722124,
           4722814-4722879,4723001-4723162,4723255-4723347,
           4723449-4723541,4723626-4724273
          Length = 478

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 117 YSVGKVFHPGKSS----NFTDDYPYSWSEYPYHPPTEMYKDAKVCRNKKTKKLERNLI-- 170
           YS G    PG S     NF D    S++E    PP+  +  A   R+ K  + ERN    
Sbjct: 3   YSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPTML 62

Query: 171 ---C-PVSVKRQP--GQSLPDLQSLDYAIDFLKKRNGS 202
              C P + +  P  GQ LP  +  +  +D  + +N S
Sbjct: 63  ANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSS 100


>03_01_0486 -
           3699290-3699296,3699485-3699745,3699889-3700046,
           3700265-3700469,3701285-3701574,3701648-3701810,
           3701897-3701985,3702086-3702153,3702560-3702722
          Length = 467

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 87  DFYSYWRDRSNGQGNFTT--IPQFFKEHGYDTYSVGKVFHPGKSSNFTDDYPYSWSEYPY 144
           D  S+W D+SN +  F         ++  +    + K F P  S+N  +  P SWS+  Y
Sbjct: 98  DKRSFWADQSNFEDIFDVKHFIDTLRDEVHIVKQLPKRFGPEDSNNILNMPPVSWSDEKY 157

Query: 145 H 145
           +
Sbjct: 158 Y 158


>01_06_0415 +
           29185332-29185443,29186043-29186432,29186794-29187131,
           29187681-29187896
          Length = 351

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 90  SYWRDRSNGQGNFTTIPQFFKEHGYDTYSVGKVFHPGKSSN 130
           SY+ +R NG+  F +    F+   Y   SV  V HPGK ++
Sbjct: 95  SYFTERGNGKSGFIS----FQGSSYQMKSVESVPHPGKEAS 131


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,803
Number of Sequences: 37544
Number of extensions: 692483
Number of successful extensions: 1246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 8
length of query: 508
length of database: 14,793,348
effective HSP length: 85
effective length of query: 423
effective length of database: 11,602,108
effective search space: 4907691684
effective search space used: 4907691684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)