Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
         (359 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   4.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 167 ALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEML 208
           A++ R       N +  + IA+I+ Q S+F V  + +NN  L
Sbjct: 202 AMFSRKPCSINENLKMGLDIASITAQASSFVVWPLVENNPTL 243


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 167 ALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEML 208
           A++ R       N +  + IA+I+ Q S+F V  + +NN  L
Sbjct: 202 AMFSRKPCSINENLKMGLDIASITAQASSFVVWPLVENNPTL 243


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 163 ALIRALYERVVVLEQRNR-----EQDIVIANISKQLSAFAVAKMKQNNEMLLRYCMGNYV 217
           AL++A    V++     R     +  + + N      ++ +A M +  E LL +C   Y 
Sbjct: 389 ALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYS 448

Query: 218 WRIDN 222
            ++DN
Sbjct: 449 MKVDN 453


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 105 NDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQE 138
           NDT S ++ L N Y  M + N++ + ++    Q+
Sbjct: 318 NDTPSILHELRNNYFHMDLENNVQSYSLQLLHQK 351


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 168 LYERVVVLEQRNREQDIVIA 187
           +Y+RVV L ++N +  I++A
Sbjct: 576 MYDRVVALREKNPDLKILLA 595


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,440
Number of Sequences: 317
Number of extensions: 3952
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 114,650
effective HSP length: 58
effective length of query: 301
effective length of database: 96,264
effective search space: 28975464
effective search space used: 28975464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)