Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12) 101 1e-21
SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 2e-13
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 3e-12
SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24) 64 2e-10
SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28) 61 1e-09
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 58 1e-08
SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 3e-08
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19) 50 4e-06
SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25) 49 5e-06
SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15) 35 0.12
SB_49243| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.12
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 32 0.83
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.83
SB_6398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 31 1.9
SB_3655| Best HMM Match : BTB (HMM E-Value=0.035) 30 3.3
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 3.3
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 30 3.3
SB_47034| Best HMM Match : GED (HMM E-Value=0.52) 29 4.4
SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4) 29 4.4
SB_36805| Best HMM Match : GED (HMM E-Value=0.24) 29 4.4
SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062) 29 4.4
SB_20011| Best HMM Match : GED (HMM E-Value=0.65) 29 4.4
SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_24060| Best HMM Match : GED (HMM E-Value=0.52) 29 4.4
SB_19038| Best HMM Match : GED (HMM E-Value=0.52) 29 4.4
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4) 29 4.4
SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 29 5.8
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_37554| Best HMM Match : GED (HMM E-Value=0.52) 29 7.7
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
>SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12)
Length = 359
Score = 101 bits (241), Expect = 1e-21
Identities = 46/153 (30%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 210 RYCMGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQN---THFF 266
R C G ++W++DNF+ + + ++SP FYTS GY+ C+R+N++ +
Sbjct: 205 RVCNGTFIWKLDNFRQCREGSIAGLTAAIHSPPFYTSMYGYKMCLRMNLNGVDGGLGEHV 264
Query: 267 ALHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQR---DTMMSNTNLKAFSKPATEI 323
+L +H+M+ + D LEWPF GRI+ +++Q S+R +T+++ NL AF +P +
Sbjct: 265 SLFIHMMQGDWDGILEWPFIGRITLSILDQSDQIDSRRPISETLVAKPNLLAFQRPTSPR 324
Query: 324 CVRGFGYTEYAVLGDVIRNGFVKDDVLIIRVNI 356
+G+GY E+ + + ++K++ +++R+ I
Sbjct: 325 NHKGYGYVEFCPIDQLTEGQYIKNNSILVRIQI 357
>SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 74.1 bits (174), Expect = 2e-13
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 22/155 (14%)
Query: 213 MGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNI--SPQN--THFFAL 268
+G +VWRI ++K D Y +YSP FYTS GY+ ++ N+ +P N TH +L
Sbjct: 506 IGTFVWRICDYK--------DLYGEIYSPSFYTSKYGYKVQLKANLRTNPFNGGTH-LSL 556
Query: 269 HVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTN------LKAFSKPATE 322
+ +M E D LEWPF +I+ +++Q + + +T++ N + K F +P T
Sbjct: 557 YACIMVGEYDALLEWPFRRKITLYVIDQ--SDQRKHETLLINPDDVLPDRKKCFHRPITG 614
Query: 323 ICVRGFGYTEYAVLGDVIRNGFVKDDVLIIRVNIK 357
V G+G T + L ++ GF+KD V+ I+ ++
Sbjct: 615 NNV-GYGLTRFLSLEELTSGGFIKDGVMFIKAVVE 648
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 70.1 bits (164), Expect = 3e-12
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 16/172 (9%)
Query: 197 AVAKMKQNNEMLLRYCM-GNYVWRIDNFKTRLD-AMLKDHYKMLYSPGFYTSPNGYRFCV 254
A K+++N L C G ++W+I N+K + D A+ ++SP FYTS GY+ +
Sbjct: 424 ACQKIRENESRSL--CTNGIFLWKISNYKHQYDQAVASPEELAIFSPPFYTSQYGYKLRL 481
Query: 255 RLNISPQN----THFFALHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSN 310
+ ++ ++ TH +L++ +MK + D LEWPF +I+F L++Q + + + N
Sbjct: 482 KAYLNGRDRGKGTHL-SLYIIIMKGDYDALLEWPFKQKITFYLIDQSEKQNHRTHLLSPN 540
Query: 311 TNLK----AFSKPATEICVRGFGYTEYAVLGDVIRNG-FVKDDVLIIRVNIK 357
+L F++P + + G G + V +V+ +G +VKDDV+ I+ ++
Sbjct: 541 RSLPNIKVVFNRPTVKENL-GIGNPCF-VPNEVLESGEYVKDDVMFIKAVVE 590
>SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 69.3 bits (162), Expect = 4e-12
Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 22/270 (8%)
Query: 99 MNQHLNNDTQSHMNLLMN-------AYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGN 151
M+QHL+ + QSH+N+ N + ++ + N+ + +Q+ AL K+
Sbjct: 138 MDQHLDTNIQSHLNMTCNQLLLSRDVCASLQTELTATKENLSSAKQQVAAL----TKESQ 193
Query: 152 QTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRY 211
L T + + L +++ VLE R R+ + + + S +++Q +
Sbjct: 194 ILLKEKLEMTKHM-KELTKKMDVLESRVRQNSAKVTTVRGE-SGAQFHELQQGLGRVNEL 251
Query: 212 CMGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRL----NISPQNTHFFA 267
+VWRI +F L L S F+T NGY+ L +S +NTH A
Sbjct: 252 LKMRFVWRIPDFADSLRQAKLGLKVRLDSEPFFTEKNGYKLRATLYPNGTMSGKNTHISA 311
Query: 268 LHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRD---TMMSNTNLKAFSKPATEIC 324
V + + E D L WPF I L++Q L +R+ T++ N +L+ F +P T +
Sbjct: 312 F-VSINRGEYDGILAWPFTRVIKITLLDQKENVLQRRNVEKTIIPNPSLENFHRPKT-VS 369
Query: 325 VRGFGYTEYAVLGDVIRNGFVKDDVLIIRV 354
G G + + +V D L ++V
Sbjct: 370 NNGRGSATFVSHEKLWTENYVVDGTLFMQV 399
>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
Length = 567
Score = 64.1 bits (149), Expect = 2e-10
Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 6/181 (3%)
Query: 178 RNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYCMGNYV-WRIDNFKTRLDAMLKDHYK 236
R E+ + + + L A+A +++ L + + W+I N +
Sbjct: 381 RRLERQLELHDQGTGLRNLAIADLEERLNTLQGTTFDSVLLWKITNVANKRSEATSGRVT 440
Query: 237 MLYSPGFYTSPNGYRFCVRLNISPQ---NTHFFALHVHLMKTENDDCLEWPFNGRISFVL 293
YSP F+T P+GY+ C R+ ++ H +L +M+ E D L WPF +++ +L
Sbjct: 441 SFYSPCFFTGPHGYKMCARIYLNGDGMGRNHHVSLFFVIMRGEFDALLRWPFRQKVTLML 500
Query: 294 VNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAVLGDVIRNGFVKDDVLIIR 353
++Q E D + + +F +P E+ + G + + ++ +++DD + ++
Sbjct: 501 LDQDNVE-HVIDAFRPDPSSSSFQRPRAEMNIAS-GCPLFCSHEQLTQHAYIRDDTMFLK 558
Query: 354 V 354
+
Sbjct: 559 I 559
>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 63.3 bits (147), Expect = 3e-10
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYCMGNYVWRIDNFKTRL-- 227
E V +E QD + +++ ++ + +++Q E + G ++W+I N+ T+L
Sbjct: 139 EEVKRIEMEKHLQDSMASHLD--MAHIRIRELEQRQEKICTN--GKFLWKISNY-TQLFQ 193
Query: 228 DAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISP----QNTHFFALHVHLMKTENDDCLEW 283
+ K + L SP FYT GY+ ++ + TH +L+V +MK + D L W
Sbjct: 194 QSATKKEKEKLCSPPFYTGQYGYKLRAEAFLNGLGQGKGTHL-SLYVVIMKGDYDSVLPW 252
Query: 284 PFNGRISFVLVNQVYPELSQRD---TMMSNTNLKAFSKPATEICVRGFGYTEYAVLGDVI 340
PF R+ F+L++Q S+++ + + N F +P + GFG ++ +
Sbjct: 253 PFQQRVDFILIDQDDDFTSRQNKTWRLTCDRNSDYFGRP-NKAKSLGFGCPKFVSQETLK 311
Query: 341 RNGFVKDDVLIIRVNIK 357
FV+D+ + I + ++
Sbjct: 312 SRNFVRDNTVFIMIEVE 328
>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 62.5 bits (145), Expect = 5e-10
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 22/155 (14%)
Query: 213 MGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVR--LNISPQN--THFFAL 268
+G +VWRI ++K D Y+ +YSP FYTS GY+ ++ L+ +P N TH + L
Sbjct: 584 VGTFVWRICDYK--------DLYEEIYSPSFYTSKYGYKVQLKAYLHTNPFNGETHLW-L 634
Query: 269 HVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTN------LKAFSKPATE 322
+ +M E D LEWPF +I+ +++Q + + +T++ N + + F +P
Sbjct: 635 YACIMVGEYDALLEWPFRRKITLYVIDQ--SDQRKHETLLINPDDVLPDRKRCFHRPIMG 692
Query: 323 ICVRGFGYTEYAVLGDVIRNGFVKDDVLIIRVNIK 357
V G+ T L ++ GF+ D V+ I+ ++
Sbjct: 693 NNV-GYCLTRSLSLEELTSGGFIADGVMFIKAVVE 726
>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
Length = 562
Score = 61.3 bits (142), Expect = 1e-09
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 214 GNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNT---HFFALHV 270
G Y+W+ID + R + +YSP FY GY+ C R+ + +L
Sbjct: 409 GTYIWKIDEYTRRYQEGVSGKTPSIYSPPFYVGRYGYKACARVYPNGDGMGKGSHLSLFF 468
Query: 271 HLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGY 330
LM+ E D L WPF +++F L++Q DT + +F +P + + + G
Sbjct: 469 VLMRGEFDALLPWPFRQKVTFKLLDQDRVH-DIGDTFRPDPTSSSFKRPTSNMNIAS-GC 526
Query: 331 TEYAVLGDVIRNGFVKDDVLIIRVNI 356
+ ++ +V+DD + I++ +
Sbjct: 527 PLFISHTNLQTRAYVRDDTMFIKIAV 552
>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
Length = 684
Score = 57.6 bits (133), Expect = 1e-08
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 177 QRNREQDIVIANISKQLSAFAVAKMKQNNEM------LLRYCMGNYVWRIDNFKTR-LDA 229
QR+ E+ ++ + +S A+ + K+ N + L Y +WRI F L
Sbjct: 469 QRHIEE--IVQQHLELMSELAIPQQKKINSLKEIVRHLQPYHDSKLLWRIQPFLGNPLTK 526
Query: 230 MLKDHYKMLYSPGFYTSPNGYRFCVRL----NISPQNTHFFALHVHLMKTENDDCLEWPF 285
+ L+SP FYTS GY+F V L N S + TH +L++ L+ E D L WPF
Sbjct: 527 GKRKPGTELHSPXFYTSNYGYKFKVVLFPYGNGSGEGTHL-SLYIRLLPGEYDSLLPWPF 585
Query: 286 NGRISFVLVNQVYPELSQRDTMMSNTNL 313
G+I+ L+ +V Q+DT++S + L
Sbjct: 586 EGQITLTLLARVRTS-EQKDTLVSRSAL 612
>SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 56.8 bits (131), Expect = 3e-08
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 214 GNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRL---NISPQNTHFFALHV 270
G ++W+ID F R + +YS FYT GY+ C RL ++ ++ +
Sbjct: 307 GTFLWKIDKFTERYAEAKSGNATSIYSSPFYTHRFGYKLCARLFPNGDGSARDNYLSIFI 366
Query: 271 HLMKTENDDCLEWPFNGRISFVLVNQ 296
LM+ E D L WPF I+ L++Q
Sbjct: 367 ALMRGEYDSILPWPFQETITITLIDQ 392
>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
Length = 1451
Score = 49.6 bits (113), Expect = 4e-06
Identities = 86/394 (21%), Positives = 152/394 (38%), Gaps = 50/394 (12%)
Query: 4 KGSLNSGHCPIDNINLSMKVDIFPDNYTKREIQ-EQRMNCPFSAKGCTVKVTPLDLDAHI 62
+G L + P ++I +S V + T+ + +R+ P TV V L
Sbjct: 1066 EGLLKYRNTPFEDIGVS-PVQLLMSRRTRTMLPTHKRLLLPQPVNPDTV-VKALKTRQEK 1123
Query: 63 AVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMK 122
A NQ + P + I C+ P+ + + ++H + Q+H+++ + K
Sbjct: 1124 AAANDNQ-NSKDLPPLGICCNCVPS-VRYLQGRESARDEHCESAVQTHLHIACETIRDNK 1181
Query: 123 INNDMSNANMDTKEQEAMALWDAPDKDGN---QTSSPPLNNTSALIRALYERVVVLEQRN 179
+ +D QE K+ N + + + I AL + +
Sbjct: 1182 EQISDLHKELDKVRQELQTKSCDHMKEVNAIREKHDEAIRDNKGQIEALSKEHGIASNTI 1241
Query: 180 REQDIVIANISKQLSAFAVAKMKQNNEMLLR--------YCMGNYVWRIDNFKTRLDAML 231
E + + K+L A +++N + + + Y G +VWRI N+K + +
Sbjct: 1242 HENKEQLDTLKKELG-IASETIRKNRDQIAKLSTACKTQYTDGTFVWRICNYKDKYKKAV 1300
Query: 232 K---------------DHYKM----LYSPGFYTSPNGYRFCVRLNISP------QNTHFF 266
D M + S FYTS GY+ +RL P + TH
Sbjct: 1301 AFATNQEVKGGNSDSDDDISMAGDIMVSLPFYTSRYGYK--MRLKAYPNGYGDGKGTHL- 1357
Query: 267 ALHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSN----TNLKAFSKPATE 322
+L + +MK E D LEWPF +I+ L+NQ S+ + + F +P
Sbjct: 1358 SLSIRIMKGEYDAILEWPFRRKITLSLINQSEQWRSETVEIYPDDATPDKKHKFERPIEN 1417
Query: 323 ICVRGFGYTEYAVLGDVIRNGFVKDDVLIIRVNI 356
V G GY+ + ++ ++KDDV+ I I
Sbjct: 1418 ENV-GCGYSCFISHMELNSGDYIKDDVIFIEAVI 1450
>SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)
Length = 462
Score = 49.2 bits (112), Expect = 5e-06
Identities = 50/250 (20%), Positives = 97/250 (38%), Gaps = 10/250 (4%)
Query: 76 PEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTK 135
P+ C+FK GC S++ + HL + H+ L + K+ D + +
Sbjct: 163 PKATESCTFKHVGCSFQ-GSKNNLADHLAKSLEDHLQLACQLVQDQKLELDRQRERVRKQ 221
Query: 136 EQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISKQLSA 195
++ L + K Q L + + + L+++ + Q I +LS
Sbjct: 222 DEAIYQLTETTAKL-KQLLEEQLTTRQSQDHVIQKLSEQLKEQKKHQSKFEKEIKAKLSD 280
Query: 196 FAVAKMKQNNEMLLRYCMGNY---VWRIDNFKTRLDAMLKDH-YKMLYSPGFYTSPNGYR 251
+ + + Y +WR+ NF ++ + + S FYTS GY+
Sbjct: 281 LEKKESSKECSLFSNPVGSGYGELIWRVSNFNKKVARIRTGRGDDPVCSEPFYTSAFGYK 340
Query: 252 F-C-VRLN-ISPQNTHFFALHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMM 308
C LN + +++ +M E D L+WP R +F L++Q P++ R ++
Sbjct: 341 ISCWAYLNGRGREEGRSVSVYACVMYGEYDAVLKWPIRPRYTFALMDQ-NPDVEDRREIV 399
Query: 309 SNTNLKAFSK 318
+ F +
Sbjct: 400 RVRKVNDFKR 409
>SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15)
Length = 262
Score = 34.7 bits (76), Expect = 0.12
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 12 CPIDNINLSMKVDIFPDNYTKREIQEQRMNCPFSAKGCTVKVTPLDLDAHIAVCEYNQPE 71
CP+DN + ++ D+ T + I + C + GC K L H+A C++ +
Sbjct: 7 CPVDNTAIDYS-QVYADDVTNQMIMSLTVICDYYQAGCKWKGQLRKLQGHLAECKFVSAD 65
Query: 72 TSS 74
S+
Sbjct: 66 CSN 68
>SB_49243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 192 QLSAFAVAKMKQNN-EMLLRYCMGNYVWRIDNFKTRL-DAMLKDHYKMLYSPGFYTSPNG 249
QL A+ KQ E R G ++W+I F +L DA + + S FYTSP+G
Sbjct: 42 QLQKEALTCQKQEIVECRSRCANGEFIWKIQCFSRKLMDAKTGRASEPMISEAFYTSPHG 101
Query: 250 YR 251
+R
Sbjct: 102 WR 103
Score = 34.3 bits (75), Expect = 0.16
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 276 ENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAV 335
E D L+WP R +F L++Q ++RD +++ ++ S+P+ + + G G + +
Sbjct: 199 EFDSILKWPLYPRYTFTLLDQSEDTKTKRD-VVATFEPQSISRPSADRQL-GKGARRFVL 256
Query: 336 LGDVIRNGFVKDDVLIIRVNI 356
+V + KD+ + I+ ++
Sbjct: 257 QDEVCGTTYCKDNTIFIKFSV 277
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 33.1 bits (72), Expect = 0.36
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 37 EQRMNCPFSAKGCT--VKVTPLDLDAH-----IAVCEYNQPETSSQPEIHIPCSFKPAGC 89
E ++C F T VK T DL +H +AV E NQP +S+ + C G
Sbjct: 1201 EYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVAVIEQNQPTSSADESV---CRLYEVGR 1257
Query: 90 KETFDSQDEMNQHLNND 106
FD ++E + +D
Sbjct: 1258 SRRFDQEEEESDEGEDD 1274
>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
Length = 491
Score = 31.9 bits (69), Expect = 0.83
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 207 MLLRYCMGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNTHFF 266
+++R C+G YV+++ + ++A Y F N + +PQ H +
Sbjct: 390 IMVRGCLGYYVYKLPSVNFTINAR--------YCADFPKKKNNGNVIMMSQYAPQTNHGY 441
Query: 267 ALHVHLMKTEND 278
AL H++ TE D
Sbjct: 442 ALQGHVVATEQD 453
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 31.9 bits (69), Expect = 0.83
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 101 QHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNN 160
Q L +D +S ++ L S ++ ND+ M+ E+E M L +K + + PL+
Sbjct: 1426 QSLKDDLESQVDDLNFQKSSLEKENDLLRKKMEIVEEE-MKLTAIENKPLDAVDAKPLSE 1484
Query: 161 TSALIRALYERVVVLEQRNREQ 182
+ ++A ++ V NRE+
Sbjct: 1485 ENEALKAQISQITVELALNREE 1506
>SB_6398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 70 PETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSN 129
PET S P + ++ +++D + N DT+ +N N+Y+ +NN+
Sbjct: 6 PETQSTITTETPETQSTTDTRDPVNNRDIRDPVNNTDTRDPVN---NSYTRDTVNNN--- 59
Query: 130 ANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTS 162
N DT++ D D N+ + P+NN +
Sbjct: 60 -NRDTRDPVNNNNRDTRDTVNNRDARDPVNNNN 91
>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 91 ETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSN 129
E F S + N H+ +DTQ+ + N S ++N D N
Sbjct: 334 EDFSSHTDSNDHVTSDTQNDADFSSNTESSDRLNPDTQN 372
>SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 119 SEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQR 178
SE+K + + ++ +T E+ + A + G Q +NNTSALI+ L +V L+ +
Sbjct: 27 SELKTSVESAHEKTETVEKTQLTQEKALNDLGTQ-----MNNTSALIKDLKNELVDLKAQ 81
Query: 179 NREQDIVIANISK 191
+ +++ N+++
Sbjct: 82 SMRNNLIFYNVNE 94
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 30.7 bits (66), Expect = 1.9
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 118 YSEMKINNDMSNANMDTKEQEAMALWDAPD-----KDGNQTSSPPLNNTSALIRALYERV 172
Y E+++ ++ +N M T QE A + PD K N+ NN ++ +
Sbjct: 2264 YKELQVTHEETNYVMATNVQEIEAAPELPDDYDAVKLDNERLQSENNNLIGKLKNNENTI 2323
Query: 173 VVL-EQRNREQDIVIANISKQLSAFAVAKMKQNNE 206
+L E++N+ QD ++ ++ K+LS+ K ++E
Sbjct: 2324 NILQEEKNKSQDKIL-DLQKELSSRTHELQKVSSE 2357
>SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)
Length = 369
Score = 29.9 bits (64), Expect = 3.3
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 101 QHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNN 160
Q LN D S L + + ++N++S+ N D + A+W P + + PL+
Sbjct: 91 QQLNQDEFSAF-LRYSVLGPVYLDNNVSDYNPDEYPWQDKAVWIFPCNKTPRKTDHPLDV 149
Query: 161 TSALIRALYERVVV---LEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYCMGN 215
T A+ ++ E + + + Q + E D+ ++ K ++ A + +++++L +G+
Sbjct: 150 TDAIHDSIEESIFINTDINQSSSESDLPDSD-EKMKTSSANEHTENDDDVILENGVGH 206
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.9 bits (64), Expect = 3.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 87 AGCKETFDSQDEMNQHLN 104
A CKETFDS++ ++ H+N
Sbjct: 884 ASCKETFDSRENLDAHVN 901
Score = 29.9 bits (64), Expect = 3.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 87 AGCKETFDSQDEMNQHLNNDTQS 109
+ CKETF S+ E+ +HL+N +S
Sbjct: 1233 SSCKETFCSEGELKEHLSNRCES 1255
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 29.9 bits (64), Expect = 3.3
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 152 QTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANIS-KQLSAFAVAKMKQNNEML-- 208
Q S P + T ++R+L E + L + + E + A + + + + + +++L
Sbjct: 268 QQKSKPADTTKFILRSLEEIDMALAEGDAEGSLKQAQSTLRTVQSLNEDSVPNKDDVLGN 327
Query: 209 LRYCMGNYVWRIDNFKTRLDAMLKD 233
L C+GN +D+ K LD +KD
Sbjct: 328 LHSCIGNAYLELDDSKKALDHHMKD 352
>SB_47034| Best HMM Match : GED (HMM E-Value=0.52)
Length = 238
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 193 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 232
>SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4)
Length = 188
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 70 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 109
>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
Length = 377
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 320 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 359
>SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)
Length = 238
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 72 TSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNAN 131
T+++PE P + K+ + D+ N NN+ +H N N Y + N+ +N N
Sbjct: 180 TTTKPEATTPTTTTTTNNKK---ADDDRNDEDNNNDSNHNNNNNNDYKDSNTNDSHNNGN 236
>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
Length = 427
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 333 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 372
>SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 79 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 118
>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 220 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 259
>SB_24060| Best HMM Match : GED (HMM E-Value=0.52)
Length = 297
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 240 DGAGNMAGRLNGASSLIRAEHEKTIFVHCMNHQLNLCIAN 279
>SB_19038| Best HMM Match : GED (HMM E-Value=0.52)
Length = 250
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 193 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 232
>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 27 PDNYTKREIQEQRMNCPFSAKGCTVKVTPLDLDAHIAVCEYNQPE 71
PDN +E + +C + GC+ PL D H + Y Q +
Sbjct: 611 PDNSILKEQAQGEFDCSYGKSGCSSGTGPLPCDTHSTI-TYRQDQ 654
>SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)
Length = 285
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + + N + ++ IAN
Sbjct: 171 DGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIAN 210
>SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.1 bits (62), Expect = 5.8
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 92 TFDSQDEMNQHLNNDT-QSHMNLLMNAYSEMKINNDMSNANM--DTKEQEAM-ALWDAPD 147
+F Q+ + Q L + + L M ++N+D + + +T EA+ L DA +
Sbjct: 118 SFKDQETLIQELKKENFDLKLRLYMEQKERERLNDDFTQKVLVLETDLTEALDELSDALE 177
Query: 148 KDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISK 191
++ + S +NN ++L +V LE+ REQD I +S+
Sbjct: 178 REKDYDIS--INNARRREKSLMTKVRRLEETMREQDEEIKYLSR 219
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 29.1 bits (62), Expect = 5.8
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 13/85 (15%)
Query: 160 NTSALIRALY---ERVVVLEQRNREQDIVIANISKQL--SAFAVAKMKQN---NEMLLRY 211
N +AL +A+ ++++ L+Q+N+E+++VI ++K++ + M++N + LR
Sbjct: 499 NVAALTKAVVSKEQQLLNLDQKNKEKEVVILEMNKRIQEKKETITNMEKNISDKDKQLRS 558
Query: 212 CMGNYVWRIDNFKTRLDAMLKDHYK 236
+V DN RL KDH K
Sbjct: 559 LQSRFV---DN--CRLGESSKDHQK 578
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.1 bits (62), Expect = 5.8
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 94 DSQDEMNQHLNNDTQSHMNLLMNAYSEMKINN-----DMSNANMDTKEQEAMALWDAPDK 148
D+ ++ N + N+D ++ N + Y + NN D +N N D +++ + + D
Sbjct: 121 DNNNKNNNNNNDDDDNNKNDNDDDYDDNNNNNDDYDDDNNNNNNDDDDEDDDSNNNNNDY 180
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQ--RNREQDIVI 186
D N+ + NN R+ RV+ EQ R R +D+V+
Sbjct: 181 DDNKCNREERNNEEE--RSRRPRVLTEEQRARKRARDLVL 218
>SB_37554| Best HMM Match : GED (HMM E-Value=0.52)
Length = 187
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 149 DGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIAN 188
DG + LN S+LIRA +E+ + N + ++ IAN
Sbjct: 130 DGAGNMAGRLNGASSLIRAEHEKAIFAHCMNHQLNLCIAN 169
>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 94 DSQDEMNQHLNNDTQSHMNLLMNAY--SEMKINNDMSNANMDTKEQEAMALWDAPDKDGN 151
D+ D NND + H+ + + +K N+ N+N T + + +KD +
Sbjct: 27 DNADNEKNWRNNDGEDHLKRTADCVQPANLKQRNNKRNSNYTTNNNHSNNNYTIDNKDNS 86
Query: 152 QTSSPPLNN 160
++ +NN
Sbjct: 87 SNNNYTINN 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,507,789
Number of Sequences: 59808
Number of extensions: 533583
Number of successful extensions: 1466
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 60
length of query: 359
length of database: 16,821,457
effective HSP length: 83
effective length of query: 276
effective length of database: 11,857,393
effective search space: 3272640468
effective search space used: 3272640468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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