Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    31   1.2  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    30   2.7  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    30   2.7  
At5g22370.1 68418.m02610 ATP-binding family protein contains Pfa...    29   3.6  
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    29   3.6  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    29   6.3  
At3g46190.1 68416.m05000 meprin and TRAF homology domain-contain...    29   6.3  
At2g20250.1 68415.m02366 hypothetical protein                          28   8.4  
At1g06180.1 68414.m00650 myb family transcription factor identic...    28   8.4  

>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 78  IHIPCSFKPAGCKETFDSQDEMNQHLNN-DTQSHMNLLMNAYSEMKINNDMSNA 130
           + + C +KP G     ++ D +   + N +T  +++L+ N +   K +N+M  A
Sbjct: 442 VKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEMVQA 495


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 42  CPFSA----KGCTVKVTPLDLDAH-IAVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQ 96
           CPF      + C+  +   D+D H I VC          P   + C F   GC       
Sbjct: 216 CPFKIIPCEQNCSESIMRRDMDRHCITVC----------PMKLVNCPFHSVGCLSDVHQC 265

Query: 97  DEMNQHLNNDTQSHMNLLMNAYSEMKINN 125
           +    HL+N +   M +L + Y E  +++
Sbjct: 266 EVQQHHLDNVSSHLMYILRSIYKEASLDD 294


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 20  SMKVDIFPDNYTKREIQEQRMNCPFSAKGCTVKVTPLDLD---AHIAVCEY 67
           S+++  F     ++ ++   ++CP +  GCT K+ P D +   AH  VCE+
Sbjct: 85  SLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKI-PYDNESESAHERVCEF 134


>At5g22370.1 68418.m02610 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 291

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 209 LRYCMGNYVWRIDNFKTRLDAMLKDHYKMLYSPG 242
           L YCM      ID  +++L  +LKDHY +   PG
Sbjct: 74  LVYCMEYLEKNIDWLESKLKPLLKDHYILFDFPG 107


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 147 DKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNE 206
           D DG +     +   +A IRA  ERV+V+E++  E       + K++    +  ++ +  
Sbjct: 238 DGDGGERRRKGMRAVAAEIRAFAERVMVMEKKKIEFAKETVRLRKEMEIRRINLIQSSQT 297

Query: 207 MLLRY 211
            LL++
Sbjct: 298 QLLQF 302


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 49  CTVKVTPLDLDAHIAVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQ 108
           C++ ++ L +  H ++C++N         +H+ C+ +P     +  S   +   ++N   
Sbjct: 80  CSLCISGLQVGYHCSICDFN---------VHLVCARRPPSSTSSSSSSSPLPTSVDNSKV 130

Query: 109 SHMNLLMNAYSEMKINNDMSNANM 132
               LL++   E  +  +  N NM
Sbjct: 131 HQHPLLLSKNVETFLLKEGRNCNM 154


>At3g46190.1 68416.m05000 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 291

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 327 GFGYTEYAVLGDV--IRNGFVKDDVLIIRVNIKCV 359
           G+GY E+  L D+     GFV DD+L + V I  +
Sbjct: 250 GWGYQEFIPLADLQDATKGFVVDDLLEVEVEIMAI 284


>At2g20250.1 68415.m02366 hypothetical protein
          Length = 559

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 41  NCPFSAKGCTVKVTPLDLDAHIAVCEYNQPETSSQPEIH--IPCSFK 85
           +CPF   GC +   P    ++  + E + P TS++ + H  IP  F+
Sbjct: 505 HCPFKVPGCDIVSFPFSSISNSNLLEASSPTTSNRFKSHDWIPFQFQ 551


>At1g06180.1 68414.m00650 myb family transcription factor identical
           to  GB:CAA90748 GI:1263093 from [Arabidopsis
           thaliana];contains PFAM profile:PF00249
          Length = 246

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 90  KETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMD--TKEQEAMALWD 144
           KE F S        +   QS  +  ++A + +  NND+SN+N D  T  ++ +A+ D
Sbjct: 125 KEDFVSTTAAEMPTSPQQQSSSSADISAITTLGNNNDISNSNKDSATSSEDVLAIID 181


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,773,785
Number of Sequences: 28952
Number of extensions: 372764
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 11
length of query: 359
length of database: 12,070,560
effective HSP length: 82
effective length of query: 277
effective length of database: 9,696,496
effective search space: 2685929392
effective search space used: 2685929392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)