Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 32 0.11
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 32 0.14
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.77
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 29 1.3
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 28 2.3
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 28 2.3
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 3.1
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 27 3.1
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.1
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 27 5.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 5.4
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.1
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 7.1
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 7.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 9.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 9.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 9.4
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 32.3 bits (70), Expect = 0.11
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 63 AVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMK 122
A EYN T S + +P +F PAG +T DS + + D QS L + Y E
Sbjct: 35 AAYEYNYTATGSFNQSIMPANFTPAGGIDTNDSSPTYHPFSDFDYQSLSLALYHEYIEYD 94
Query: 123 INN 125
+ N
Sbjct: 95 LFN 97
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 31.9 bits (69), Expect = 0.14
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 77 EIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQS 109
E H P K G KET D++D NQ ++ND ++
Sbjct: 94 EAHDPILSKATGDKETEDAKDSSNQDISNDQKA 126
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 281 LEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAVLGDVI 340
L++P G+I F V+ YP+ + ++N +L ++ ++ + G + + L +++
Sbjct: 1091 LKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAR--EKVAIVGISGSGKSTLVELL 1148
Query: 341 RNGFVKDDVLI 351
R + +D+ I
Sbjct: 1149 RKTYPSEDIYI 1159
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 95 SQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTS 154
++ E ++ NDTQS +L + S K+N ++ ++ AL P++ +Q
Sbjct: 8 NETEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALNTTPNESTSQID 67
Query: 155 SPP 157
S P
Sbjct: 68 SSP 70
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 55 PLDLDAHIAVCEYNQPETSSQPEIHIPCSFKPAGCK 90
PL++ + ++C + P T S+P + I S GC+
Sbjct: 115 PLNIIDNPSLCSFTLPATWSEPPLQISLSTSSNGCR 150
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 33 REIQEQRMNCPFSAK-GCTVKVTPLD-LDAHIAVCEYNQPETSSQPE 77
RE + + +N S C T +D +D ++ EY P TS Q E
Sbjct: 137 RETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTAEYTMPSTSEQSE 183
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 284 PFNGRISFVLVNQVYPEL-SQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAVLGDVIRN 342
P NG + ++ Y SQR ++++N +PAT++ + + +Y L
Sbjct: 417 PTNGTVQLLIPGCTYDNTCSQRGSVIANVYFAKNKQPATKLVQQASDFDQYVSLYSGYLQ 476
Query: 343 GF 344
GF
Sbjct: 477 GF 478
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 108 QSHMNLLMNAYSEMK-INNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIR 166
Q H + + S+MK + + + +DT A L + ++ + T+ +
Sbjct: 51 QQHTLTIADVQSDMKNLKSIFESVEIDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSA 110
Query: 167 ALYERVVVLE---QRNREQDIVIANISKQLSAFAV 198
++ +LE +N E+D +I NIS +LS +A+
Sbjct: 111 IKLSKMAILEWFRNKNSERDRLILNISSRLSTYAL 145
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 3.1
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 123 INNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQ 182
+ N++++A + KE E + + + D + L + RV LE+R ++
Sbjct: 1682 LQNELADAVVKQKEYEVLYVEKSNDYNTLLLQKEKLMKQIDEFHVI--RVQDLEEREKKD 1739
Query: 183 DIVIANISKQLSAFAVAKMKQNNEMLLRYCMGNYVW--RIDNFKTRLDAMLKDHYKML 238
++ K+L+ F V ++++ E LR N I + +T+ D ++ + +L
Sbjct: 1740 QLLFQRYQKELNGFKV-QLEEEREKNLRIRQDNRHMHAEIGDIRTKFDELVLEKTNLL 1796
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 93 FDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQ 152
F + + + L+ + ++ +++MN E+ +ND ++ E + ++D DG +
Sbjct: 15 FGNINNFSSFLDKENET-FDVMMNEAPELSEDNDAQEDELEKLEDAELFMFDTGSADGAK 73
Query: 153 TSSP 156
S P
Sbjct: 74 DSVP 77
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 331 TEYAVLGDVIRNGFVKDDVLIIRVNIKC 358
T+Y LGD + GF + ++ + +KC
Sbjct: 74 TKYLFLGDFVDRGFYSVETFLLLLTLKC 101
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 72 TSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNAN 131
T +P + C+F GC + F DE+ +H T + N NA + NN ++N
Sbjct: 49 TGEKPHV---CTFP--GCAKRFSRSDELTRHARIHTNA--NSRRNAAAAAAANNSARSSN 101
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 75 QPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYS 119
+PE C ++ C++ + D + H++N T S++ L+ N S
Sbjct: 19 EPESETICHWQ--SCEQDLLTLDNLVHHIHNGTTSNLRLISNINS 61
>SPAC105.03c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 68 NQPETSSQPEIHIPCS 83
+QPE+ +QP + IPCS
Sbjct: 8 SQPESQAQPNLCIPCS 23
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 90 KETFDSQDEMNQH-LNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDK 148
KE+ +S DE +Q N DT N N + +++ND + + + Q+ ++ A ++
Sbjct: 13 KESHNSIDEQSQQPANTDTLVKDN-SFNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNE 71
Query: 149 DGNQTSS 155
GN ++
Sbjct: 72 SGNSENT 78
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 264 HFFALHV-HLMKTENDDCLEWPFNGRISFVLVNQVYPELSQ-RDTMMSNTNLKAFSKPAT 321
H LH+ +L+K EN L + G+++ + N + P L D++ + + +K A+
Sbjct: 294 HVCMLHLLNLLKKENVKMLAFATIGKVAVAITNSIIPYLDPICDSIKESLKIHIRNKSAS 353
Query: 322 EICV 325
+ +
Sbjct: 354 DAAI 357
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 9.4
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 92 TFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGN 151
++ ++ + + +D QS L + Y+ N + A E+ + D+
Sbjct: 909 SYSEREALLESSLSDLQSKHTSLESQYNYSLRNIEQLQAASKLAEEMVERVKTEYDEYRL 968
Query: 152 QTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEML 208
QTS L I +L +R+V+L+ + NI+K S VA + + N+ L
Sbjct: 969 QTSES-LEKNHLKITSLEQRIVILQDEIASSSLRCENITKD-SETRVALLLEENKHL 1023
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 102 HLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDK 148
H T +NL A +E + NND N KE + +L DA DK
Sbjct: 245 HGMEGTFETVNLTSEAGNEKEFNNDSVVLNTTPKEMQISSL-DAVDK 290
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 9.4
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 67 YNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLM--NAYSEMKIN 124
+N+ ++SS P+ H F P G + + + H++ + +A SE++ +
Sbjct: 117 FNESKSSSPPDAHTDKYFTPCGSPTKLIHSTLLEERDTPSSLEHVSFYLQESAVSEVRFD 176
Query: 125 NDMSNA-------NMDTKEQEAMALWDAPDKDG-NQTSS 155
+N N+ + E D+P NQ SS
Sbjct: 177 KPSNNGPLGRSSLNLSSLSHELQTSQDSPSLSATNQLSS 215
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,313
Number of Sequences: 5004
Number of extensions: 77601
Number of successful extensions: 211
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 20
length of query: 359
length of database: 2,362,478
effective HSP length: 74
effective length of query: 285
effective length of database: 1,992,182
effective search space: 567771870
effective search space used: 567771870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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