Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0539 - 23745936-23746097,23746661-23747566 34 0.20
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 31 1.1
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 31 1.4
10_08_0120 + 14972010-14973197 30 2.5
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353... 30 2.5
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 30 3.3
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 30 3.3
10_08_0066 + 14610220-14610798,14610928-14611287 29 4.3
10_02_0177 + 6227583-6227786,6227929-6228434,6228908-6228994,622... 29 4.3
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 29 4.3
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 29 4.3
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 29 4.3
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 5.7
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 29 5.7
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 5.7
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 7.6
05_01_0379 + 2975701-2976831 29 7.6
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 7.6
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 7.6
>02_04_0539 - 23745936-23746097,23746661-23747566
Length = 355
Score = 33.9 bits (74), Expect = 0.20
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 49 CTVKVTPLD--LDAHIAVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNND 106
C KV P + + H+ CE ++ S P I C F GC+ F Q +++H +
Sbjct: 213 CPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLINCPFYQVGCESAF-PQCVLDKHCSER 271
Query: 107 TQSHMNLLMNAYSEM-KINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALI 165
Q H+ ++ + NDM N + E +A +L + N+T + A I
Sbjct: 272 LQIHLMYILELTTRHDAFVNDM-NQRLHLLE-KAQSLNELSGALDNRTLTLTAKEQEAKI 329
Query: 166 RALYERVVVLEQR 178
+ L + + V E +
Sbjct: 330 KKLEQDLKVQETK 342
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 31.5 bits (68), Expect = 1.1
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 216 YVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNTHFFALHVHLMKT 275
+ W I+NF TR++ K HY + G G+++ V + N F++++ + +
Sbjct: 47 FTWTIENF-TRING--KKHYSEPFVVG------GFKWRVLIFPKGNNVDHFSMYLDVADS 97
Query: 276 ENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAV 335
N W + S +VNQ++P+ + R N + +G+T +
Sbjct: 98 VNLP-YGWNRYAQFSLAVVNQIHPKYTIRKDTQHQFNARE----------SDWGFTSFMP 146
Query: 336 LGDVI--RNGFVKDDVLIIRVNI 356
L D+ G++ +D +++ +
Sbjct: 147 LSDLYDPSRGYLVNDTVVVEAEV 169
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 31.1 bits (67), Expect = 1.4
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 94 DSQDEMNQHLNNDTQ----SHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPD-K 148
D DE+++ L++DT+ ++ ++ +I +D N M + E + W A D K
Sbjct: 580 DESDELDEDLDDDTKAEVLAYARKMLRKKQREQILDDAYNKYM--FDDEGLPKWFAEDEK 637
Query: 149 DGNQTSSPPLNNTSALIRALYERV------VVLEQRNREQDIVIANISK-QLSAFAVAKM 201
NQ P A +RA ++ + V E + R++ + + + K + A A+A
Sbjct: 638 RHNQPMKPVTKEEVAAMRAQFKEIDARPAKKVAEAKARKKRVAMKKLDKARQKADAIADQ 697
Query: 202 KQNNEMLLR 210
NE R
Sbjct: 698 NDINEQSKR 706
>10_08_0120 + 14972010-14973197
Length = 395
Score = 30.3 bits (65), Expect = 2.5
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 216 YVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVR---LNISPQNTHFFALHVHL 272
+V I + L + + +L S F S G+ +C+R + + ++ F ++++ L
Sbjct: 34 HVLTIHGYSDTLKSNVDPSQHLLLSSPF--SAGGHTWCIRYCPIGCTEESKDFISIYLVL 91
Query: 273 MKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTE 332
T D + +++F L++Q + + + T L FS T + GY
Sbjct: 92 EDTITD-----VVSAQVTFSLLDQ---QGNPMPSHTLTTPLLKFSLQGT--LPKALGYNS 141
Query: 333 YAVLGDVIRNGFVKDDVLIIRVNI 356
+ D+ R+G +KDD I V++
Sbjct: 142 FIRRDDLERSGHLKDDCFAIGVHV 165
>02_02_0592 -
11934238-11934249,11934755-11934835,11935166-11935324,
11936362-11936442,11936523-11936591,11937147-11937260,
11937805-11937858,11938788-11938915,11940527-11940782
Length = 317
Score = 30.3 bits (65), Expect = 2.5
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 98 EMNQHLNNDTQSHMNLLMNAYSEMKINNDMS--NANMDTKEQEAMALWDAPDK-DGNQTS 154
E N +L + + +LMN Y K + S +N+ E E LW K + N S
Sbjct: 104 EENSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWRVVRKMNENADS 163
Query: 155 SPPL-NNTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKM 201
L N + +L V +E EQ I I + + AF + KM
Sbjct: 164 IESLANGAEKRVESLSSEVKKMEGVIAEQWIQIRQLEQ---AFVLTKM 208
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N+E ++ N S+++SA + + + ++LL+ C
Sbjct: 757 EQVEVLEKKNKELELACKNQSEKISALEL-ESESCRQLLLKSC 798
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 223 FKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNTHFFALHVH 271
FK +D + + H++ L S Y +G R V + P NT ++ LH H
Sbjct: 405 FKAEVDTISRVHHRHLVSLVGYCIADGQRMLV-YDFVPNNTLYYHLHGH 452
>10_08_0066 + 14610220-14610798,14610928-14611287
Length = 312
Score = 29.5 bits (63), Expect = 4.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 326 RGFGYTEYAVLGDVIRNGFVKDDVLIIRVNIKCV 359
R +GY+E+ G + ++ ++KDD IR+++ +
Sbjct: 123 RSWGYSEFMKRGSLEKSEYLKDDCFKIRIDVSVI 156
>10_02_0177 +
6227583-6227786,6227929-6228434,6228908-6228994,
6229103-6229159,6230814-6231052,6231171-6231289,
6231377-6231463,6231823-6231855
Length = 443
Score = 29.5 bits (63), Expect = 4.3
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 283 WPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSK----PATEICVRGFGYTEYAVLGD 338
W + LV+ +P+ + TM + +NL AF K A IC+ + Y +L
Sbjct: 192 WLIDAAQFVYLVSGRFPDAWKGFTMTAFSNLAAFVKLSLVSAIMICLEFWYYAALLILVG 251
Query: 339 VIRNGFVKDDVLIIRVN 355
+++N ++ D++ I +N
Sbjct: 252 LLKNARLQLDIMSICIN 268
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 29.5 bits (63), Expect = 4.3
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N+E ++ N S+++SA + + + ++LL+ C
Sbjct: 703 EQVEVLEKKNKELELACKNQSEKISALEL-ENESCRQLLLKSC 744
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 29.5 bits (63), Expect = 4.3
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 285 FNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGF 328
+ GR ++++YP L ++T++S++ L+ F ++++ F
Sbjct: 450 YGGRHRMAAISRLYPALVSKETLLSSSELEPFRNFSSQLAALDF 493
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 29.5 bits (63), Expect = 4.3
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N+E ++ N S+++SA + + + ++LL+ C
Sbjct: 745 EQVEVLEKKNKELELACKNQSEKISALEL-ENESCRQLLLKSC 786
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 96 QDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEA 139
Q E+ Q + D + NA MK++NDM D KE+ A
Sbjct: 702 QGELGQGKSTDVDQKEDAGHNAAENMKVDNDMDLLGKDGKEKPA 745
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 209 LRYCMGNYVWRIDNFKTRLDAMLKDHYKMLYSPG----FYTSPNG----YRFCVRLNISP 260
L YCM ID + +L +++DHY + PG F+ N Y+ +LN+
Sbjct: 25 LVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSIIYKLIKKLNLRL 84
Query: 261 QNTHFFALHV 270
H H+
Sbjct: 85 TAVHLIDAHL 94
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 29.1 bits (62), Expect = 5.7
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N E ++ N S+++SA + + + ++LL+ C
Sbjct: 775 EQVEVLEKKNEELELACKNQSEKISALEL-ESENCRQLLLKSC 816
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N+E ++ N ++++SA + + + ++LL+ C
Sbjct: 934 EQVEVLEKKNKELELACKNQNEKISALEL-ESENCRQLLLKSC 975
>05_01_0379 + 2975701-2976831
Length = 376
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 32 KREIQEQRMNCPFSAKGCTVKVTPLDLDAHIAVCEY 67
+R + R+ CP +A GC + D++AH C +
Sbjct: 178 ERLVDAIRVACPHAAHGCAARPAYHDVEAHRLACPH 213
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 28.7 bits (61), Expect = 7.6
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 60 AHIAVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYS 119
A +A CE+N P P+ + + + +ET ++ + + + + A +
Sbjct: 102 AALAACEFNLPPPPPPPKAKVEAAVEETKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAA 161
Query: 120 EMKINN-----DMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVV 174
+ + S+ T+E +A A D P K+ ++ + P E+ VV
Sbjct: 162 PPEAGTEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPEEKTVV 221
Query: 175 LEQ 177
+ +
Sbjct: 222 VTE 224
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYC 212
E+V VLE++N+E ++ N ++++SA + + + ++LL+ C
Sbjct: 758 EQVEVLEKKNKELELACKNQNEKISALEL-ESENCRQLLLKSC 799
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,672
Number of Sequences: 37544
Number of extensions: 414496
Number of successful extensions: 965
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 23
length of query: 359
length of database: 14,793,348
effective HSP length: 83
effective length of query: 276
effective length of database: 11,677,196
effective search space: 3222906096
effective search space used: 3222906096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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