GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
         (359 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.35 

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 123  INNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQ 182
            I ND    +  T++Q+ M         GN  + P +   +A +    E  V     N+ +
Sbjct: 1273 IKNDPMKTSGSTQQQQQMERQQFGF--GNNDNLPGVEEVAAELENANESEVAANVENQRE 1330

Query: 183  DIVIANISKQLSAFAVAKMKQNNE 206
            D V AN+         A ++  NE
Sbjct: 1331 DEVAANVENAKENEVAANVENQNE 1354


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,898
Number of Sequences: 2123
Number of extensions: 16636
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 2
length of query: 359
length of database: 516,269
effective HSP length: 65
effective length of query: 294
effective length of database: 378,274
effective search space: 111212556
effective search space used: 111212556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)