GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
         (359 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    42   7e-04
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      42   7e-04
AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical...    42   9e-04
Z47808-3|CAA87775.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    29   5.1  
AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical...    29   6.7  

>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 217 VWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRF--CVRLNISPQNT-HFFALHVHLM 273
           +W+ID  + R +         ++S  F +   GY+   C  L     +     +L+V L+
Sbjct: 266 IWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLL 325

Query: 274 KTENDDCLEWPFNGRISFVLVNQVYPELSQR-------DTMMSNTNLKAFSKPATEICVR 326
           K E D  LEWPF+  I   L++Q  P    R       D      N K  ++P  E    
Sbjct: 326 KGEFDPTLEWPFHRAIKISLLDQ-NPRPEDRVNITYVIDPRKLKANEKFLARPRGERNA- 383

Query: 327 GFGYTEYAVLGDVIRNGFVKDDVLIIRVNI 356
            FG   +  L  +++N +VKDD + +++++
Sbjct: 384 AFGSQSFCSLA-ILQN-YVKDDKIYVQIDV 411


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 217 VWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRF--CVRLNISPQNT-HFFALHVHLM 273
           +W+ID  + R +         ++S  F +   GY+   C  L     +     +L+V L+
Sbjct: 266 IWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLL 325

Query: 274 KTENDDCLEWPFNGRISFVLVNQVYPELSQR-------DTMMSNTNLKAFSKPATEICVR 326
           K E D  LEWPF+  I   L++Q  P    R       D      N K  ++P  E    
Sbjct: 326 KGEFDPTLEWPFHRAIKISLLDQ-NPRPEDRVNITYVIDPRKLKANEKFLARPRGERNA- 383

Query: 327 GFGYTEYAVLGDVIRNGFVKDDVLIIRVNI 356
            FG   +  L  +++N +VKDD + +++++
Sbjct: 384 AFGSQSFCSLA-ILQN-YVKDDKIYVQIDV 411


>AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical
           protein Y110A7A.2 protein.
          Length = 335

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 225 TRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNTHF---FALHVHLMKTENDDCL 281
           T + A     ++ +YS  FY+   GY+             F   F++ V LMK E DD L
Sbjct: 170 TVVKATKNKSHRSIYSQPFYSHGYGYKMMAVAAPYGDGLAFREYFSVFVCLMKGEWDDIL 229

Query: 282 EWPFNGRISFVLVNQVYPELSQRDTMMSN-TNLKAFSKPATEICVRGFGYTEYAVLGDVI 340
           EWPF   ++F +++    EL  +   ++    ++ F +    +    FG+  +  L  V 
Sbjct: 230 EWPFRCDVTFSILSDDKKELLTKTIYVNEMPEIQEFLERPEGLRNGTFGFQNFLPLAKVT 289

Query: 341 RNGFVKDDVLIIRVNI 356
              F  D  + I++ +
Sbjct: 290 E--FAADGDIFIQIKV 303


>Z47808-3|CAA87775.1|  360|Caenorhabditis elegans Hypothetical
           protein D2013.3 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 124 NNDMSNANMDTKEQEAMALWDAP 146
           +ND S  N D +E EA  LWD P
Sbjct: 304 DNDKSRRNPDFREVEAKVLWDKP 326


>U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical
           protein ZC196.6 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 29/171 (16%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 47  KGCTVKVTPLDLDAHIAVCEYNQ---PETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHL 103
           +G    + PLD D H  V E  Q     ++ +P++ I  + +P+   +  + + + +  +
Sbjct: 145 EGVQPDIAPLD-DVHRPVVELTQYLGSNSTEKPDVTIAKNLEPSKITKIVNEETKPDDQI 203

Query: 104 NNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLN---- 159
              +   +    +  S +++ N+  N  +D   +    +     K     + P  N    
Sbjct: 204 QQISHLDVTAKEDVDSSIELENE-DNCQIDDDIKNTSEVRKEITKFEETVAVPDENEQSF 262

Query: 160 -NTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLL 209
            N+S  +    E+    E +N++ D+V     ++      + + +NN +L+
Sbjct: 263 VNSSNFVDPNCEKETSNEDQNQQNDVVAEETMEKPGNLTRSFLTENNRLLI 313


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 66   EYNQPETSSQPEIHIPC--SFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKI 123
            +YN P TSSQP+ H P   S +    +++++S    NQ L N  Q   N ++  +     
Sbjct: 1211 QYNAPSTSSQPQ-HFPTEPSIRQPPPQQSYNS----NQMLQNPRQQPQNQIVQNFQSAPQ 1265

Query: 124  NNDMSNANMDT 134
             +   N  + T
Sbjct: 1266 RHPHQNPQIAT 1276


>AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 111  MNLLMNAYSEMKINN-DMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALY 169
            MN ++  Y E KI   +M   +++ + Q+     +  D   +      +  +S LI  L 
Sbjct: 928  MNDVLREY-ERKIEQLNMEKTDLENENQKLRETQNRQDSHYSNLEKEVMEKSS-LIDELQ 985

Query: 170  ERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNN 205
             ++  L   N EQ + IA +   L        +QNN
Sbjct: 986  NQIQKLSDENNEQRLTIAKLETALEDEKARFARQNN 1021


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,417,986
Number of Sequences: 27539
Number of extensions: 415171
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 12
length of query: 359
length of database: 12,573,161
effective HSP length: 82
effective length of query: 277
effective length of database: 10,314,963
effective search space: 2857244751
effective search space used: 2857244751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)