GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001290-TA|BGIBMGA001290-PA|IPR002083|MATH,
IPR008974|TRAF-like
         (359 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   9.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   9.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   9.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   9.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 90  KETFDSQDEMNQHLNNDTQSHMNLLMNAY-SEMKINNDMSNANMDTKE 136
           K    S DE+  H+N D+      LMN   +  + NN +  +  D+++
Sbjct: 52  KTLISSHDELPGHINCDSSKFEEDLMNKLPTTPEYNNHLYGSTPDSRD 99


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 215 NYVWRIDNFKTRLDAMLKDHYKMLY 239
           N+ W+   F   L A+  D YK+LY
Sbjct: 232 NFQWKDGLFGLSLSALQTDGYKILY 256


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 130 ANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANI 189
           AN DTK      L+D    + N+   P +NNT  L   L  ++  L + N +  ++  N+
Sbjct: 30  ANPDTKR-----LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNV 84


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/59 (18%), Positives = 30/59 (50%)

Query: 94  DSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQ 152
           D++    QH ++ +    N     +SE   N + S ++ +++E++A    +A  ++ ++
Sbjct: 723 DTEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKSE 781


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 244 YTSPNGYRFCVRLNISPQNTH 264
           +  PN YRF   LN   ++TH
Sbjct: 156 FIPPNAYRFRPSLNPRFESTH 176


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 244 YTSPNGYRFCVRLNISPQNTH 264
           +  PN YRF   LN   ++TH
Sbjct: 156 FIPPNAYRFRPSLNPRFESTH 176


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 244 YTSPNGYRFCVRLNISPQNTH 264
           +  PN YRF   LN   ++TH
Sbjct: 156 FIPPNAYRFRPSLNPRFESTH 176


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 244 YTSPNGYRFCVRLNISPQNTH 264
           +  PN YRF   LN   ++TH
Sbjct: 389 FIPPNAYRFRPSLNPRFESTH 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,550
Number of Sequences: 429
Number of extensions: 5810
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 140,377
effective HSP length: 59
effective length of query: 300
effective length of database: 115,066
effective search space: 34519800
effective search space used: 34519800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)