Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001289-TA|BGIBMGA001289-PA|undefined
         (169 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   2.3  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   2.3  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 108 IFFFTVGVQRHAEYYSPLL 126
           IFFFT  VQ    Y+  LL
Sbjct: 542 IFFFTANVQAGELYFMSLL 560



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 59  SPIMWGLFMCMMHWA 73
           +PIMW   M +  W+
Sbjct: 262 NPIMWDRVMLLTFWS 276


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 108 IFFFTVGVQRHAEYYSPLL 126
           IFFFT  VQ    Y+  LL
Sbjct: 267 IFFFTANVQAGELYFMSLL 285


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.332    0.140    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,633
Number of Sequences: 317
Number of extensions: 1744
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 169
length of database: 114,650
effective HSP length: 53
effective length of query: 116
effective length of database: 97,849
effective search space: 11350484
effective search space used: 11350484
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 40 (20.2 bits)