Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001289-TA|BGIBMGA001289-PA|undefined
         (169 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26170.1 68415.m03140 thromboxane-A synthase, putative / cyto...    29   1.2  
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    29   2.2  
At1g62305.2 68414.m07030 expressed protein contains Pfam profile...    27   6.6  
At1g62305.1 68414.m07029 expressed protein contains Pfam profile...    27   6.6  
At3g48200.1 68416.m05259 expressed protein                             27   8.7  

>At2g26170.1 68415.m03140 thromboxane-A synthase, putative /
           cytochrome P450 family protein simiar to Thromboxane-A
           synthase (TXA synthase) (TXS) (SP:P47787) [Sus scrofa];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_15810029_gb_AY054283.1_
          Length = 522

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 36  HPYWMGLEGYQYEHGPAALFAALSPIMWGLFMCMMHWAVCNDYAGSGTAFL-ESRVFKFF 94
           H +W  L+ +  +H     F   + ++  +++    W+VCN    +    +    +   +
Sbjct: 5   HQWWEVLDPFLTQHEALIAFLTFAAVVIVIYLYRPSWSVCNVPGPTAMPLVGHLPLMAKY 64

Query: 95  NKIAYSVYLTQF-PIFFFTVGVQ 116
               +SV   Q+ PIF F +G Q
Sbjct: 65  GPDVFSVLAKQYGPIFRFQMGRQ 87


>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 77  DYAGSGTAFLESRVFKFFN---KIAYSVYLTQFPIFFFTVGVQRHAEYYSP---LLLFHI 130
           DY  +    L   +F FF     +++++  TQ  +  FTV +Q HA++  P   L+  H+
Sbjct: 659 DYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHAQHRLPTFQLIFVHV 718

Query: 131 PEMFAIFAISI 141
            E      I I
Sbjct: 719 IESLVFVPIMI 729


>At1g62305.2 68414.m07030 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 354

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 85  FLESRVFKFFNKIAYSVYLTQFPIFFFTVGVQRHAEYYSPLLLFHIP----EMFAIFAIS 140
           FL  R FK  ++  +S+Y+   P F F     R   +Y+  L   I     E   I A  
Sbjct: 84  FLWDRFFKSADQRNFSIYVHSIPGFVFDESSTRSHFFYNRQLKNSIEVVWGESSMIAAER 143

Query: 141 IMTTVAIEMPFNQ 153
           ++   A+E P NQ
Sbjct: 144 LLLASALEDPSNQ 156


>At1g62305.1 68414.m07029 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 378

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 85  FLESRVFKFFNKIAYSVYLTQFPIFFFTVGVQRHAEYYSPLLLFHIP----EMFAIFAIS 140
           FL  R FK  ++  +S+Y+   P F F     R   +Y+  L   I     E   I A  
Sbjct: 84  FLWDRFFKSADQRNFSIYVHSIPGFVFDESSTRSHFFYNRQLKNSIEVVWGESSMIAAER 143

Query: 141 IMTTVAIEMPFNQ 153
           ++   A+E P NQ
Sbjct: 144 LLLASALEDPSNQ 156


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 53  ALFAALSP-IMWGLFMCMMHWAVCNDYAGSG-TAFLESRVFKFFNK 96
           +L   LSP   +G  + +M+ +VC+D AG+     L SR F  F++
Sbjct: 186 SLLVGLSPDAQYGRIVLVMNKSVCSDIAGNNFKRALGSRFFVHFDR 231


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.332    0.140    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,714,773
Number of Sequences: 28952
Number of extensions: 139821
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 5
length of query: 169
length of database: 12,070,560
effective HSP length: 76
effective length of query: 93
effective length of database: 9,870,208
effective search space: 917929344
effective search space used: 917929344
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 56 (26.6 bits)